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NCBI C++ ToolKit: include/misc/eutils_client/eutils_client.hpp Source File

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virtual const char * GetErrCodeString(void) const override

Get error code interpreted as text.

NCBI_EXCEPTION_DEFAULT(CEUtilsException, CException)

Subclass this to override how messages (warnings and errors) are handled.

virtual void HandleMessage(EDiagSev severity, CEUtilsException::EErrCode err_code, const string &message) const =0

Pure virtual function, to be implemented by subclass.

virtual ~CMessageHandler()

Class for querying via E-Utils.

void Link(const string &db_from, const string &db_to, const vector< TEntrezId > &uids_from, vector< objects::CSeq_id_Handle > &uids_to, const string &xml_path=kEmptyStr, const string &command="neighbor")

void SearchHistory(const string &db, const string &term, const string &web_env, objects::CSeq_id_Handle query_key, int retstart, CNcbiOstream &ostr)

const list< CTime > GetTime(void) const

void LinkOut(const string &db, const vector< objects::CSeq_id_Handle > &uids, xml::document &docsums, const string &cmd="llinks")

Uint8 x_CountOnce(const string &params)

void Fetch(const string &db, const vector< objects::CSeq_id_Handle > &uids, CNcbiOstream &ostr, const string &retmode="xml")

void SetMaxReturn(int ret_max)

int m_CachedHostNameCount

CRef< CMessageHandler > m_MessageHandler

void x_SummaryOnce(xml::document &docsums, const string &params)

void SearchHistory(const string &db, const string &term, const string &web_env, Int8 query_key, int retstart, CNcbiOstream &ostr)

Uint8 Search(const string &db, const string &term, vector< objects::CSeq_id_Handle > &uids, const string &xml_path=kEmptyStr)

TParamList m_AdditionalParams

const list< string > GetUrl(void) const

static string x_BuildUrl(const string &host, const string &path, const string &params)

void x_AddAdditionalParameters(string &params)

void x_Fetch(const string &db, const vector< T > &uids, CNcbiOstream &ostr, const string &retmode="xml")

void x_Summary(const string &db, const vector< T > &uids, xml::document &docsums, const string &version="")

void FetchHistory(const string &db, const string &web_env, objects::CSeq_id_Handle query_key, int retstart, EContentType content_type, CNcbiOstream &ostr)

void AddParameter(const string &name, const string &value)

CIncreasingTime m_WaitTime

void Summary(const string &db, const vector< objects::CSeq_id_Handle > &uids, xml::document &docsums, const string &version="")

unsigned int m_MaxRetries

void Link(const string &db_from, const string &db_to, const vector< objects::CSeq_id_Handle > &uids_from, vector< TEntrezId > &uids_to, const string &xml_path=kEmptyStr, const string &command="neighbor")

void SetLinkName(const string &link_name)

void ClearAddedParameters()

void x_Link(const string &db_from, const string &db_to, const vector< T1 > &uids_from, vector< T2 > &uids_to, const string &xml_path, const string &command)

void LinkHistory(const string &db_from, const string &db_to, const string &web_env, objects::CSeq_id_Handle query_key, CNcbiOstream &ostr)

Uint8 x_Search(const string &db, const string &term, vector< T > &uids, const string &xml_path=kEmptyStr)

void x_FetchOnce(CNcbiOstream &ostr, const string &params)

std::invoke_result< Call >::type CallWithRetry(Call &&call, const char *name)

void SetMessageHandlerDiagPost(void)

Equivalent to: ERR_POST(Warning|Error << ...).

void x_Get(string const &path, string const &params, CNcbiOstream &ostr)

Uint8 x_ParseSearchResults(const string &xml_file, vector< T > &uids)

void x_LinkOnce(CNcbiOstream &ostr, const string &params)

map< string, string > TParamList

void SetMessageHandlerThrowOnError(void)

Equivalent to: NCBI_THROW, ERR_POST, LOG_POST as appropriate.

void Link(const string &db_from, const string &db_to, const vector< objects::CSeq_id_Handle > &uids_from, vector< objects::CSeq_id_Handle > &uids_to, const string &xml_path=kEmptyStr, const string &command="neighbor")

const string & x_GetHostName(void) const

void x_LinkOnceT(const string &db_from, const string &db_to, vector< T > &uids_to, const string &xml_path, const string &params)

void SetMessageHandler(CMessageHandler &message_handler)

Set custom message handler.

void x_GetOnce(string const &path, string const &extra_params, CNcbiOstream &ostr)

void SetMessageHandlerDefault(void)

Default is to log all messages at informational level.

void SetUserTag(const string &tag)

void SetConnTimeout(const CTimeout &timeout)

Uint8 x_SearchOnce(const string &params, vector< T > &uids, const string &xml_path)

Uint8 ParseSearchResults(CNcbiIstream &istr, vector< objects::CSeq_id_Handle > &uids)

void SetWaitTime(const CIncreasingTime &wait_time)

void FetchHistory(const string &db, const string &web_env, Int8 query_key, int retstart, EContentType content_type, CNcbiOstream &ostr)

void LinkHistory(const string &db_from, const string &db_to, const string &web_env, Int8 query_key, CNcbiOstream &ostr)

Uint8 ParseSearchResults(const string &xml_file, vector< objects::CSeq_id_Handle > &uids)

Uint8 Count(const string &db, const string &term)

void Link(const string &db_from, const string &db_to, const vector< objects::CSeq_id_Handle > &uids_from, CNcbiOstream &ostr, const string &command="neighbor")

void x_LinkOutOnce(xml::document &doc, const string &params)

void SummaryHistory(const string &db, const string &web_env, Int8 query_key, int retstart, const string &version, CNcbiOstream &ostr)

void SummaryHistory(const string &db, const string &web_env, objects::CSeq_id_Handle query_key, int retstart, const string &version, CNcbiOstream &ostr)

void SetMaxRetries(unsigned int max_retries)

void x_LinkOut(const string &db, const vector< T > &uids, xml::document &doc, const string &cmd)

CTimeout – Timeout interval.

The xml::document class is used to hold the XML tree and various bits of information about it.

Include a standard set of the NCBI C++ Toolkit most basic headers.

EDiagSev

Severity level for the posted diagnostics.

EErrCode

Error types that an application can generate.

int64_t Int8

8-byte (64-bit) signed integer

uint64_t Uint8

8-byte (64-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

const string version

version string

string Execute(const string &cmmd, const vector< string > &args, const string &data=kEmptyStr)

const GenericPointer< typename T::ValueType > T2 value

Miscellaneous common-use basic types and functionality.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

Defines: CTimeFormat - storage class for time format.

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