Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/eutils__client_8cpp_source.html below:

NCBI C++ ToolKit: src/misc/eutils_client/eutils_client.cpp Source File

vector<string>& args,

five_seconds = { 5, 0 };

( !

.empty() ) {

;

;

;

;

;

;

<

T>

(ostream& osm,

vector<T>& uids) {

(

it = uids.begin()+1; it != uids.end(); ++it) {

(

it = uids.begin(); it != uids.end(); ++it) {

(it != uids.begin()) {

);

);

osm << seh.GetSeqId()->GetSeqIdString(

);

(

it = uids.begin()+1; it != uids.end(); ++it) {

osm <<

;

NStr::StringToNumeric<T>(

);

& message)

& message)

& message)

!IsTaxidQuery(message))

: m_HasError(

)

(

)

{

m_HasError; }

(list<string>& errors) { errors = m_Errors; }

(

& message)

m_Text_chunks.clear();

( !m_Path.empty() ) {

= OnEndElement();

string::size_type pos = m_Path.find_last_of(

);

(pos != string::npos) {

(

& contents)

m_Text_chunks.push_back(contents);

: m_MessageHandler(message_handler)

(list<TMessage>,

, m_ResultWarnings) {

->first,

->second);

m_ResultWarnings.clear();

(list<TMessage>,

, m_ResultErrors) {

->first,

->second);

m_ResultErrors.clear();

pair<CEUtilsException::EErrCode, string>

;

string::size_type pos = s.rfind(suffix);

(pos != string::npos && pos == s.size() - strlen(suffix));

contents = GetText();

(m_Path ==

) {

(x_IsSuffix(m_Path,

)) {

m_Uids.push_back(s_ParseId<T>(contents));

(x_IsSuffix(m_Path,

)) {

m_ResultErrors.push_back(message);

(x_IsSuffix(m_Path,

)) {

m_ResultErrors.push_back(message);

(x_IsSuffix(m_Path,

)) {

m_ResultWarnings.push_back(message);

(x_IsSuffix(m_Path,

)) {

m_ResultWarnings.push_back(message);

(x_IsSuffix(m_Path,

)) {

m_ResultWarnings.push_back(message);

(m_Path ==

|| m_Path ==

) {

m_Errors.push_back(contents);

: m_LinkName(dbfrom +

+ dbto)

, m_InLinkSet(

)

m_LinkName = link_name;

(name ==

) {

m_InLinkSet =

;

( GetText() == m_LinkName) {

m_Uids.push_back(s_ParseId<T>( GetText() ));

,

,

: m_CachedHostNameCount(0),

(!max_retries.empty()) {

= NStr::StringToNumeric<unsigned int>(max_retries);

(

<< max_retries);

(!timeout.empty()) {

(

<< timeout);

<

Call>

( exception& exc ) {

(

<<

<< wait_sec <<

);

params +=

;

(

<<

<< db <<

<< term);

+ term);

path =

;

+ msgs.

());

vector<CSeq_id_Handle>& uids)

vector<string>& uids)

vector<TEntrezId>& uids)

+ msgs.

());

+

);

vector<CSeq_id_Handle>& uids)

vector<string>& uids)

vector<TEntrezId>& uids)

+ xml_file);

& xml_path)

(db, term, uids, xml_path);

vector<CSeq_id_Handle>& uids,

& xml_path)

(db, term, uids, xml_path);

vector<string>& uids,

& xml_path)

(db, term, uids, xml_path);

vector<TEntrezId>& uids,

& xml_path)

(db, term, uids, xml_path);

& xml_path)

params +=

;

params +=

;

params +=

;

(

<<

<< db <<

<< term);

(bind(&CEutilsClient::x_SearchOnce<T>,

, cref(params), ref(uids), cref(xml_path)),

);

+ term);

& xml_path)

path =

;

(!xml_path.empty()) {

+ xml_file);

oss <<

;

(

, oss.str(), ostr);

& web_env,

oss <<

& web_env,

( query_key > 0 ) {

(

, oss.str(), ostr);

& web_env,

oss <<

<< query_key <<

;

(

, oss.str(), ostr);

& web_env,

& query_key,

oss <<

<< query_key <<

;

(

, oss.str(), ostr);

kEutils[] =

;

kEutilsLB[] =

;

scheme(

);

,

(

), kEutils);

host =

(web && *web ? web : kEutils);

& params,

extra_params{ params };

<<

istr << extra_params;

ostringstream reply;

reply_str = reply.str();

istringstream reply_istr(reply.str());

vector<TEntrezId> uids;

& db_to,

vector<int>& uids_from,

vector<int>& uids_to,

& xml_path,

(db_from, db_to, uids_from, uids_to, xml_path,

);

& db_to,

vector<CSeq_id_Handle>& uids_from,

vector<CSeq_id_Handle>& uids_to,

& xml_path,

(db_from, db_to, uids_from, uids_to, xml_path,

);

& db_to,

vector<string>& uids_from,

vector<string>& uids_to,

& xml_path,

(db_from, db_to, uids_from, uids_to, xml_path,

);

& db_to,

vector<TEntrezId>& uids_from,

vector<TEntrezId>& uids_to,

& xml_path,

(db_from, db_to, uids_from, uids_to, xml_path,

);

& db_to,

vector<int>& uids_from,

vector<TEntrezId>& uids_to,

& xml_path,

(db_from, db_to, uids_from, uids_to, xml_path,

);

& db_to,

vector<TEntrezId>& uids_from,

vector<int>& uids_to,

& xml_path,

(db_from, db_to, uids_from, uids_to, xml_path,

);

& db_to,

vector<TEntrezId>& uids_from,

vector<CSeq_id_Handle>& uids_to,

& xml_path,

(db_from, db_to, uids_from, uids_to, xml_path,

);

& db_to,

vector<CSeq_id_Handle>& uids_from,

vector<TEntrezId>& uids_to,

& xml_path,

(db_from, db_to, uids_from, uids_to, xml_path,

);

<

T1,

T2>

& db_to,

vector<T1>& uids_from,

vector<T2>& uids_to,

& xml_path,

std::ostringstream oss;

params = oss.str();

cref(db_from), cref(db_to), ref(uids_to), cref(xml_path), cref(params)),

);

+ params);

& db_to,

& xml_path,

& params)

path =

;

(!xml_path.empty()) {

parser.

(xml_file.c_str(), &msgs);

+ xml_file);

+ msgs.

());

& db_to,

vector<int>& uids_from,

& db_to,

vector<CSeq_id_Handle>& uids_from,

& db_to,

vector<string>& uids_from,

& db_to,

vector<TEntrezId>& uids_from,

& db_to,

vector<T>& uids_from,

std::ostringstream oss;

params = oss.str();

+ params);

path =

;

& db_to,

& web_env,

std::ostringstream oss;

<<

<< web_env

<<

<< query_key;

(

, oss.str(), ostr);

& db_to,

& web_env,

std::ostringstream oss;

<<

<< web_env

<<

<< query_key

(

, oss.str(), ostr);

& db_to,

& web_env,

& query_key,

std::ostringstream oss;

<<

<< web_env

<<

<< query_key

(

, oss.str(), ostr);

vector<int>& uids,

&

)

vector<objects::CSeq_id_Handle>& uids,

&

)

vector<string>& uids,

&

)

vector<TEntrezId>& uids,

&

)

vector<T>& uids,

&

)

params = oss.str();

+ params);

path =

;

url =

(hostname, path, params);

.push_back(url);

docstr(sb.str());

vector<int>& uids,

vector<CSeq_id_Handle>& uids,

vector<string>& uids,

vector<TEntrezId>& uids,

vector<T>& uids,

params = oss.str();

+ params);

path =

;

url =

(hostname, path, params);

.push_back(url);

docstr(sb.str());

docsums.

(xmldoc);

& web_env,

<<

<< web_env;

( retstart > 0 ) {

oss <<

<< retstart;

oss <<

<< retmax;

& web_env,

oss <<

<< query_key;

(

, oss.str(), ostr);

& web_env,

oss <<

<< query_key

(

, oss.str(), ostr);

& web_env,

& query_key,

oss <<

<< query_key

(

, oss.str(), ostr);

vector<int>& uids,

& retmode)

(db, uids, ostr, retmode);

vector<CSeq_id_Handle>& uids,

& retmode)

(db, uids, ostr, retmode);

vector<string>& uids,

& retmode)

(db, uids, ostr, retmode);

vector<TEntrezId>& uids,

& retmode)

(db, uids, ostr, retmode);

vector<T>& uids,

& retmode)

params = oss.str();

+ params);

path =

;

(content_type) {

& web_env,

<<

<< web_env;

( retstart > 0 ) {

oss <<

<< retstart;

oss <<

<< retmax;

& web_env,

oss <<

<< query_key;

(

, oss.str(), ostr);

& web_env,

EContentType content_type,

oss <<

<< query_key

(

, oss.str(), ostr);

& web_env,

& query_key,

oss <<

<< query_key

(

, oss.str(), ostr);

&params)

url = host + path;

(!params.empty()) {

url +=

+ params;

oss <<

<< param.first <<

<< param.second;

params += oss.str();

Helper hook-up class that installs default logging/registry/locking (but only if they have not yet be...

This stream exchanges data with an HTTP server located at the URL: http[s]://host[:port]/path[?...

CConn_PipeStream for command piping.

void SetLinkName(const string &link_name)

bool end_element(const string &name)

CELinkParser(const string &dbfrom, const string &dbto, vector< T > &uids)

pair< CEUtilsException::EErrCode, string > TMessage

CEutilsClient::CMessageHandler & m_MessageHandler

list< TMessage > m_ResultErrors

List of error messages from the E-Utils request.

Uint8 GetCount(void) const

bool x_IsSuffix(const string &s, const char *suffix)

CESearchParser(vector< T > &uids, CEutilsClient::CMessageHandler &message_handler)

void ProcessMessages(void)

Processes the warning and error messages from E-Utils, delivering them to the message handler and cle...

list< TMessage > m_ResultWarnings

List of warning messages from the E-Utils request.

virtual const char * GetErrCodeString(void) const override

Get error code interpreted as text.

bool end_element(const string &name)

void GetErrors(list< string > &errors)

virtual bool OnEndElement(void)

bool text(const string &contents)

string GetText(void) const

bool start_element(const string &name, const attrs_type &attrs)

list< string > m_Errors

List of parsing errors.

list< string > m_Text_chunks

bool error(const string &message)

bool HasError(void) const

Subclass this to override how messages (warnings and errors) are handled.

const list< CTime > GetTime(void) const

void LinkOut(const string &db, const vector< objects::CSeq_id_Handle > &uids, xml::document &docsums, const string &cmd="llinks")

Uint8 x_CountOnce(const string &params)

void Fetch(const string &db, const vector< objects::CSeq_id_Handle > &uids, CNcbiOstream &ostr, const string &retmode="xml")

void SetMaxReturn(int ret_max)

int m_CachedHostNameCount

CRef< CMessageHandler > m_MessageHandler

void x_SummaryOnce(xml::document &docsums, const string &params)

void SearchHistory(const string &db, const string &term, const string &web_env, Int8 query_key, int retstart, CNcbiOstream &ostr)

Uint8 Search(const string &db, const string &term, vector< objects::CSeq_id_Handle > &uids, const string &xml_path=kEmptyStr)

TParamList m_AdditionalParams

const list< string > GetUrl(void) const

static string x_BuildUrl(const string &host, const string &path, const string &params)

void x_AddAdditionalParameters(string &params)

void x_Fetch(const string &db, const vector< T > &uids, CNcbiOstream &ostr, const string &retmode="xml")

void x_Summary(const string &db, const vector< T > &uids, xml::document &docsums, const string &version="")

void AddParameter(const string &name, const string &value)

CIncreasingTime m_WaitTime

void Summary(const string &db, const vector< objects::CSeq_id_Handle > &uids, xml::document &docsums, const string &version="")

unsigned int m_MaxRetries

void SetLinkName(const string &link_name)

void ClearAddedParameters()

void x_Link(const string &db_from, const string &db_to, const vector< T1 > &uids_from, vector< T2 > &uids_to, const string &xml_path, const string &command)

Uint8 x_Search(const string &db, const string &term, vector< T > &uids, const string &xml_path=kEmptyStr)

void x_FetchOnce(CNcbiOstream &ostr, const string &params)

std::invoke_result< Call >::type CallWithRetry(Call &&call, const char *name)

void SetMessageHandlerDiagPost(void)

Equivalent to: ERR_POST(Warning|Error << ...).

void x_Get(string const &path, string const &params, CNcbiOstream &ostr)

Uint8 x_ParseSearchResults(const string &xml_file, vector< T > &uids)

void x_LinkOnce(CNcbiOstream &ostr, const string &params)

void SetMessageHandlerThrowOnError(void)

Equivalent to: NCBI_THROW, ERR_POST, LOG_POST as appropriate.

void Link(const string &db_from, const string &db_to, const vector< objects::CSeq_id_Handle > &uids_from, vector< objects::CSeq_id_Handle > &uids_to, const string &xml_path=kEmptyStr, const string &command="neighbor")

const string & x_GetHostName(void) const

void x_LinkOnceT(const string &db_from, const string &db_to, vector< T > &uids_to, const string &xml_path, const string &params)

void SetMessageHandler(CMessageHandler &message_handler)

Set custom message handler.

void x_GetOnce(string const &path, string const &extra_params, CNcbiOstream &ostr)

void SetMessageHandlerDefault(void)

Default is to log all messages at informational level.

void SetUserTag(const string &tag)

Uint8 x_SearchOnce(const string &params, vector< T > &uids, const string &xml_path)

Uint8 ParseSearchResults(CNcbiIstream &istr, vector< objects::CSeq_id_Handle > &uids)

void FetchHistory(const string &db, const string &web_env, Int8 query_key, int retstart, EContentType content_type, CNcbiOstream &ostr)

void LinkHistory(const string &db_from, const string &db_to, const string &web_env, Int8 query_key, CNcbiOstream &ostr)

Uint8 Count(const string &db, const string &term)

void x_LinkOutOnce(xml::document &doc, const string &params)

void SummaryHistory(const string &db, const string &web_env, Int8 query_key, int retstart, const string &version, CNcbiOstream &ostr)

void x_LinkOut(const string &db, const vector< T > &uids, xml::document &doc, const string &cmd)

double GetTime(int step) const

void Init(CConfig &conf, const string &driver_name, const SAllParams &params)

virtual void HandleMessage(EDiagSev severity, CEUtilsException::EErrCode err_code, const string &message) const

Pure virtual function, to be implemented by subclass.

virtual void HandleMessage(EDiagSev severity, CEUtilsException::EErrCode err_code, const string &message) const

Pure virtual function, to be implemented by subclass.

bool IsTaxidQuery(const string &message) const

virtual void HandleMessage(EDiagSev severity, CEUtilsException::EErrCode err_code, const string &message) const

Pure virtual function, to be implemented by subclass.

container_type::value_type value_type

The xml::document class is used to hold the XML tree and various bits of information about it.

void swap(document &other)

Swap one xml::document object for another.

The xml::error_messages class is used to store all the error message which are collected while parsin...

bool has_fatal_errors(void) const

Check if there are fatal errors in the error messages.

bool has_errors(void) const

Check if there are errors in the error messages.

std::string print(void) const

Convert error messages into a single printable string.

The xml::event_parser is used to parse an XML document by calling member functions when certain thing...

std::map< std::string, std::string > attrs_type

a type for holding XML node attributes

bool parse_stream(std::istream &stream, error_messages *messages, warnings_as_errors_type how=type_warnings_not_errors)

Parse what ever data that can be read from the given stream.

bool parse_file(const char *filename, error_messages *messages, warnings_as_errors_type how=type_warnings_not_errors)

Call this member function to parse the given file.

The NCBI C++ standard methods for dealing with std::string.

void s_FormatIds< string >(ostream &osm, const vector< string > &uids)

static const char * s_GetErrCodeString(CEUtilsException::TErrCode err_code)

#define DEFAULT_WAIT_TIME_MAX

static CIncreasingTime::SAllParams s_WaitTimeParams

string s_ParseId< string >(const string &str)

void s_FormatIds< CSeq_id_Handle >(ostream &osm, const vector< CSeq_id_Handle > &uids)

static void s_SearchHistoryQuery(ostringstream &oss, const string &db, const string &term, const string &web_env, int retstart, int retmax)

#define DEFAULT_WAIT_TIME_MULTIPLIER

CSeq_id_Handle s_ParseId< CSeq_id_Handle >(const string &str)

static string s_GetContentType(CEutilsClient::EContentType content_type)

#define DEFAULT_WAIT_TIME_INCREMENT

static void s_FetchHistoryQuery(ostream &oss, const string &db, const string &web_env, int retstart, int retmax, CEutilsClient::EContentType content_type)

#define HOST_NAME_REFRESH_FREQ

#define EUTILS_CLIENT_SECTION

static void s_SummaryHistoryQuery(ostream &oss, const string &db, const string &web_env, int retstart, const string version, int retmax)

static void s_FormatIds(ostream &osm, const vector< T > &uids)

#define DEFAULT_MAX_RETRIES

#define DEFAULT_WAIT_TIME

static T s_ParseId(const string &str)

This file contains the definition of the xml::event_parser class.

static const char * str(char *buf, int n)

static CNcbiApplicationGuard InstanceGuard(void)

Singleton method.

const CNcbiRegistry & GetConfig(void) const

Get the application's cached configuration parameters (read-only).

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

int GetStatusCode(void) const

Get the last seen HTTP status code, if available.

CPipe & GetPipe(void)

Return an underlying CPipe; it's valid for as long as the stream exists.

@ fHTTP_AutoReconnect

See HTTP_CreateConnectorEx()

#define DIAG_COMPILE_INFO

Make compile time diagnostic information object to use in CNcbiDiag and CException.

const CNcbiDiag & GetRef(void) const

Some compilers (e.g.

static const char * SeverityName(EDiagSev sev)

Get a common symbolic name for the severity levels.

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

EDiagSev

Severity level for the posted diagnostics.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

@ eDiag_Error

Error message.

@ eDiag_Warning

Warning message.

@ eDiag_Fatal

Fatal error – guarantees exit(or abort)

@ eDiag_Critical

Critical error message.

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Trace(CExceptionArgs_Base &args)

void Warning(CExceptionArgs_Base &args)

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

void Info(CExceptionArgs_Base &args)

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

EIO_Status CloseHandle(EChildIOHandle handle)

Close the specified child's pipe handle (even for CPipe opened with OpenSelf()).

@ fStdErr_Share

Keep stderr (share it with child)

uint32_t Uint4

4-byte (32-bit) unsigned integer

int64_t Int8

8-byte (64-bit) signed integer

uint64_t Uint8

8-byte (64-bit) unsigned integer

virtual string GetString(const string &section, const string &name, const string &default_value, TFlags flags=0) const

Get the parameter string value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

SSERV_Info * SERV_GetInfo(const char *service, TSERV_Type types, unsigned int preferred_host, const SConnNetInfo *net_info)

Same as "SERV_GetInfoEx(., ., ., ., 0, 0, 0)" – i.e.

static string ntoa(const CNCBI_IPAddr &addr)

BSD-like API.

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

IO_PREFIX::ifstream CNcbiIfstream

Portable alias for ifstream.

bool NcbiStreamCopy(CNcbiOstream &os, CNcbiIstream &is)

Copy the entire contents of stream "is" to stream "os".

size_t NcbiStreamToString(string *s, CNcbiIstream &is, size_t pos=0)

Input the entire contents of an istream into a string (NULL causes drain).

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static double StringToDouble(const CTempStringEx str, TStringToNumFlags flags=0)

Convert string to double.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static Uint8 StringToUInt8(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to Uint8.

static unsigned int StringToUInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to unsigned int.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static string URLEncode(const CTempString str, EUrlEncode flag=eUrlEnc_SkipMarkChars)

URL-encode string.

static string & ToLower(string &str)

Convert string to lower case – string& version.

@ fDecimalPosixOrLocal

StringToDouble*(): For decimal point, try both C and current locale.

void Set(EType type)

Set special value.

@ eCurrent

Use current time. See also CCurrentTime.

@ eDefault

Default timeout (to be interpreted by the client code)

const STimeout * g_CTimeoutToSTimeout(const CTimeout &cto, STimeout &sto)

CTimeout/STimeout adapters.

const char * ConnNetInfo_GetValue(const char *service, const char *param, char *value, size_t value_size, const char *def_value)

SConnNetInfo * ConnNetInfo_Create(const char *service)

void ConnNetInfo_Destroy(SConnNetInfo *net_info)

E_Choice

Choice variants.

@ e_Gi

GenInfo Integrated Database.

@ e_not_set

No variant selected.

const string version

version string

string Execute(const string &cmmd, const vector< string > &args, const string &data=kEmptyStr)

const GenericPointer< typename T::ValueType > T2 value

Parameters initialization model.

void SleepMilliSec(unsigned long ml_sec, EInterruptOnSignal onsignal=eRestartOnSignal)

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4