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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/entrez__search__tool_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence/entrez_search_tool.cpp Source File

s_name(

);

;

;

m_CurrDbName(

),

wxFlexGridSizer * sz =

wxFlexGridSizer(1, 3, 0, 0);

sz->AddGrowableCol(2);

->Add(

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),

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0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

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assemblyDB(db_name ==

);

total_uids = 0;

(itAccession == ds.

())

releaseType(

,

);

releaseType(

,

);

(

,

),

(

,

),

(

,

),

(

,

)

: m_DbName( aDbName )

(

= 0; ptr &&

< num;

++ ){

& field =

[col].first;

((field_node == doc_sum->

().

())) {

((string::npos == field.find(

)))

vector<string> nodes;

= nodes.size();

(

= 0; parent && (

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); ++

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CAppJobError Default implementation for IAppJobError - encapsulates a text error message.

CObjectList * GetObjectList()

virtual wxString GetExtraColumnName(int col) const

virtual int GetNumExtraColumns() const

virtual wxVariant GetExtraValueAt(int row, int col) const

CDocsumTableModel(const string &aDbName)

vector< TStringPair > m_Fields

maps doc summary field names to columns

virtual wxString GetImageAlias(int row) const

static void GetDbNames(vector< string > &names)

static string GetVisibleName(const string &db_name)

static void Query(const string &db_name, const string &terms, size_t &total_uids, xml::document &docsums, size_t max_return=0)

CRef< CObjectList > m_ObjectList

CObjectList Data structure representing a list of CObjects with associated Scopes and other optional ...

int AddRow(CObject *obj, objects::CScope *scope)

CObject * GetObject(int row)

access to values (row, column)

class CRegistryReadView provides a nested hierarchical view at a particular key.

string GetString(const string &key, const string &default_val=kEmptyStr) const

void Set(const string &key, int val)

access a named key at this level, with no recursion

IDMSearchFormController * m_Controller

virtual void UpdateContexts()

updates m_ContextCombo

int m_MaxResultsCount

Max possible results count.

CRef< CDMSearchResult > m_TempResult

holds temporary results, guarded by Mutex

string m_Descr

human-readable description of the Job

int m_ResultsCount

total number of results

CMutex m_Mutex

synchronizes access to the Job members

CRef< CAppJobError > m_Error

const xml::node & GetNode() const

virtual void OnSearchEnabled(bool)

IDMSearchQuery - abstract data mining query.

IDataMiningContext IDataMiningContext represents an abstract context for a Search.

The xml::document class is used to hold the XML tree and various bits of information about it.

const node & get_root_node(void) const

Get a reference to the root node of this document.

The xml::node::const_iterator provides a way to access children nodes similar to a standard C++ conta...

The xml::node_set class is used to store xpath query result set.

The xml::node class is used to hold information about one XML node.

iterator end(void)

Get an iterator that points one past the last child for this node.

iterator find(const char *name, const ns *nspace=NULL)

Find the first child node that has the given name and namespace.

node_set run_xpath_query(const xpath_expression &expr)

Run the given XPath query.

const char * get_content(void) const

Get the content for this text node.

iterator insert(const node &n)

Insert a new child node.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

virtual CObjectListTableModel * x_GetNewOLTModel() const

factory method creating new column handler for CObjectListWidget

CEntrezSearchQuery(const string &terms, const string &db_name)

CEntrezSearchTool.

virtual string GetDescription() const

returns a detailed description of the method that is used in UI

vector< TStrPair > TNamePairs

virtual void x_LoadSettings(const CRegistryReadView &view)

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

string m_CurrDbName

Entrez db names.

virtual CIRef< IDMSearchForm > CreateSearchForm()

factory method for creating a form representing the tool

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

CEntrezSearchTool()

IDMSearchTool.

CRef< CEntrezSearchQuery > m_Query

virtual wxSizer * GetWidget(wxWindow *parent)

return a widget associated with the form; the form controls the lifetime of the widget (do not delete...

wxChoice * m_DbCombo

techical name

virtual CIRef< IDMSearchQuery > ConstructQuery()

CEntrezSearchJob(CEntrezSearchQuery &query)

CEntrezSearchJob.

virtual void UpdateContexts()

updates m_ContextCombo

void SetReleaseType(xml::node &ds)

Adds an additional child node, indicating the release type (RefSeq or GenBank)

virtual IUITool * Clone() const

virtual bool IsCompatible(IDataMiningContext *context)

retuns true if the tool is compatible with the provided Search Context

virtual CRef< CSearchJobBase > x_CreateJob(IDMSearchQuery &query)

implementing CSearchToolBase pure virtual function

virtual string GetName() const

returns unique name of the method that is used in UI to identify it

virtual EJobState x_DoSearch()

performs searching, assuming that params are correct; Implement in derived classes

virtual void x_SaveSettings(CRegistryWriteView view) const

virtual bool x_ValidateParams()

returns true if Job params are correct, implement in derived classes

virtual bool IsCanceled() const override

EJobState

Job states (describe FSM)

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

void AddDefaults(TPriority pri=kPriority_Default)

Add default data loaders from object manager.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

char * dbname(DBPROCESS *dbproc)

Get name of current database.

unsigned int

A callback function used to compare two keys in a database.

const struct ncbi::grid::netcache::search::fields::SIZE size

CRef< objects::CObjectManager > om

#define row(bind, expected)

static CS_CONTEXT * context

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

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