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NCBI C++ ToolKit: src/objects/entrez2/entrez2_client.cpp Source File

& link_type,

vector<TUid>& neighbor_uids)

uids.push_back(query_uid);

& link_type,

vector<TUid>& neighbor_uids)

= link_set->GetIds().GetConstUidIterator();

(link_set->GetIds().IsSetNum()) {

neighbor_uids.reserve(link_set->GetIds().GetNum());

( ; !it.

(); ++it) {

neighbor_uids.push_back(*it);

& link_type)

uids.push_back(query_uid);

& link_type)

vector<TUid>& result_uids,

bel->SetStr(

);

bexp.

().Set(db);

bexp.

().push_back(bel);

bexp.

().SetOffset_UIDs(start);

(!bool_reply->GetUids().CanGetUids()) {

= bool_reply->GetUids().GetConstUidIterator();

result_uids.push_back(*it);

& query_string,

vector<TUid>& result_uids)

kMaxIdsInQueryString = 2500;

(query_uids.empty()) {

(query_uids.size() <= kMaxIdsInQueryString) {

(vector<TUid>, uid, query_uids) {

( !uids.empty() ) {

whole_query =

+ query_string +

+ uids +

;

(whole_query, db, result_uids);

vector<TUid> subset_query_uids;

subset_query_uids.reserve(kMaxIdsInQueryString);

(

start = 0; start < query_uids.size();

start += kMaxIdsInQueryString) {

subset_query_uids.clear();

(start + kMaxIdsInQueryString, query_uids.size());

(

= start;

< end; ++

) {

subset_query_uids.push_back(query_uids[

]);

(subset_query_uids, db, query_string, result_uids);

ids.

().Set(db);

(e2req.

()) {

(db && !db->

().empty()) {

+ db->

();

& db_from,

& db_to,

vector<TGi>& neighbor_uids)

vector<TUid> vi_neighbor_uids;

(vector<TUid>, it, vi_neighbor_uids) {

& link_type,

vector<TGi>& neighbor_uids)

vector<TUid> vi_query_uids;

(vector<TGi>, it, query_uids) {

vi_query_uids.push_back(

(

, *it));

vector<TUid> vi_neighbor_uids;

(vi_query_uids, db, link_type, vi_neighbor_uids);

(vector<TUid>, it, vi_neighbor_uids) {

& db_from,

& db_to)

& db_from,

& db_to)

vector<TUid> vi_query_uids;

(vector<TGi>, it, query_uids) {

vi_query_uids.push_back(

(

, *it));

vector<TGi>& result_uids,

vector<TUid> vi_result_uids;

(vector<TUid>, it, vi_result_uids) {

& query_string,

vector<TGi>& result_uids)

vector<TUid> vi_query_uids;

(vector<TGi>, it, query_uids) {

vi_query_uids.push_back(

(

, *it));

vector<TUid> vi_result_uids;

(vi_query_uids, db, query_string, vi_result_uids);

(vector<TUid>, it, vi_result_uids) {

vector<TUid> vi_uids;

(vector<TGi>, it, uids) {

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CRef< CEntrez2_docsum_list > GetDocsums(const vector< TUid > &uids, const string &db)

Retrieve the docsums for a set of UIDs.

virtual string GetAffinity(const CEntrez2_request &request) const

Get DB affinity of the request.

CRef< CEntrez2_link_count_list > GetNeighborCounts(TUid query_uid, const string &db)

Retrieve counts of the various types of neighbors available.

void FilterIds(const vector< TUid > &query_uids, const string &db, const string &query_string, vector< TUid > &result_uids)

Given some uids, a database, and an entrez query string, determine which of these uids match the quer...

void Query(const string &query, const string &db, vector< TUid > &result_uids, size_t start_offs=0, size_t count=0, TReply *reply=0)

Some other simplified interfaces.

void GetNeighbors(TUid query_uid, const string &db_from, const string &db_to, vector< TUid > &neighbor_uids)

A simplified interface for getting neighbors (links)

CEntrez2_boolean_element –.

CEntrez2_boolean_exp –.

CEntrez2_eval_boolean –.

void AssignUids(const vector< TUid > &uids)

#define GI_FROM(T, value)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define ENTREZ_ID_FROM(T, value)

const TPrim & Get(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

virtual CRef< CEntrez2_link_set > AskGet_links(const CEntrez2_get_links &req, TReply *reply=0)

void SetDb(const TDb &value)

Assign a value to Db data member.

const TGet_docsum & GetGet_docsum(void) const

Get the variant data.

const TDb & GetDb(void) const

Get the Db member data.

const TEval_boolean & GetEval_boolean(void) const

Get the variant data.

const TGet_term_list & GetGet_term_list(void) const

Get the variant data.

virtual CRef< CEntrez2_link_count_list > AskGet_link_counts(const CEntrez2_id &req, TReply *reply=0)

const TUids & GetUids(void) const

Get the Uids member data.

const TGet_term_pos & GetGet_term_pos(void) const

Get the variant data.

const TGet_linked & GetGet_linked(void) const

Get the variant data.

void SetUids(TUids &value)

Assign a value to Uids data member.

void SetLimits(TLimits &value)

Assign a value to Limits data member.

void SetUid(TUid value)

Assign a value to Uid data member.

const TGet_links & GetGet_links(void) const

Get the variant data.

const TDb & GetDb(void) const

Get the Db member data.

void SetReturn_UIDs(TReturn_UIDs value)

Assign a value to Return_UIDs data member.

const TGet_link_counts & GetGet_link_counts(void) const

Get the variant data.

TExp & SetExp(void)

Assign a value to Exp data member.

const TDb & GetDb(void) const

Get the Db member data.

const TRequest & GetRequest(void) const

Get the Request member data.

const TDb & GetDb(void) const

Get the Db member data.

virtual CRef< CEntrez2_boolean_reply > AskEval_boolean(const CEntrez2_eval_boolean &req, TReply *reply=0)

void SetLinktype(const TLinktype &value)

Assign a value to Linktype data member.

void SetDb(const TDb &value)

Assign a value to Db data member.

const TQuery & GetQuery(void) const

Get the Query member data.

E_Choice Which(void) const

Which variant is currently selected.

void SetQuery(TQuery &value)

Assign a value to Query data member.

const TDb & GetDb(void) const

Get the Db member data.

virtual CRef< CEntrez2_docsum_list > AskGet_docsum(const CEntrez2_id_list &req, TReply *reply=0)

const TGet_term_hierarchy & GetGet_term_hierarchy(void) const

Get the variant data.

void SetDb(const TDb &value)

Assign a value to Db data member.

const TDb & GetDb(void) const

Get the Db member data.

@ e_Get_term_pos

get position in term list

@ e_Get_link_counts

get all links from one UID

@ e_Get_docsum

get the DocSums

@ e_Get_linked

get subset of UID list which has links

@ e_Get_links

get specific links from a UID list

@ e_Get_term_list

get Term list by position

@ e_Get_term_hierarchy

get a hierarchy from a term

@ e_Eval_boolean

Boolean lookup.

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