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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/embl__formatter_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/format/embl_formatter.cpp Source File

58

SetIndent(

string

(5,

' '

));

62

m_XX.push_back(Pad(

"XX"

tmp

, ePara));

96 static string

embl_mol [14] = {

97 "xxx"

"DNA"

"RNA"

98 "RNA"

"AA "

"DNA"

"RNA"

"RNA" 104

ostringstream id_line;

106 string

hup =

ctx

.IsHup() ?

" confidential"

" standard"

;

110 const string

& mol =

ctx

.Config().UseEmblMolType() ?

113

id_line.setf(IOS_BASE::left, IOS_BASE::adjustfield);

115

<< setw(9) << locus.

GetName

()

117

<< topology << mol <<

"; " 139 Wrap

(

"AC"

, acc_line);

159

ostringstream version_line;

162

version_line <<

"g"

version

.GetGi();

165 Wrap

(

"SV"

, version_line.str());

189 if

( date_str.empty() ) {

190

date_str =

"01-JAN-1900"

;

192 Wrap

(

"DT"

, date_str);

201 Wrap

(

"DT"

, date_str);

214 if

( defline.

Skip

() ) {

233 if

( csh.

Skip

() ) {

237

vector<string>* rcx = csh.

GetCache

();

239 for

(

auto

str

: *rcx) {

254 if

( keys.

Skip

() ) {

591 default

return out

;

const TCache & GetCache(void) const

const CDate * GetUpdateDate(void) const

const CDate * GetCreateDate(void) const

const string & GetDefline(void) const

void FormatComment(const CCommentItem &keys, IFlatTextOStream &text_os) override

void x_AddXX(IFlatTextOStream &text_os) const

void FormatCache(const CCacheItem &csh, IFlatTextOStream &text_os) override

void FormatDate(const CDateItem &date, IFlatTextOStream &text_os) override

void x_Organelle(list< string > &l, const CSourceItem &source) const

void FormatFeatHeader(const CFeatHeaderItem &fh, IFlatTextOStream &text_os) override

string & Pad(const string &s, string &out, EPadContext where) const override

void FormatKeywords(const CKeywordsItem &keys, IFlatTextOStream &text_os) override

void FormatLocus(const CLocusItem &locus, IFlatTextOStream &text_os) override

void FormatSource(const CSourceItem &source, IFlatTextOStream &text_os) override

void FormatBasecount(const CBaseCountItem &bc, IFlatTextOStream &text_os) override

void EndSection(const CEndSectionItem &, IFlatTextOStream &text_os) override

void FormatReference(const CReferenceItem &keys, IFlatTextOStream &text_os) override

void x_OrganisClassification(list< string > &l, const CSourceItem &source) const

void FormatSequence(const CSequenceItem &seq, IFlatTextOStream &text_os) override

SIZE_TYPE GetWidth(void) const override

void FormatAccession(const CAccessionItem &acc, IFlatTextOStream &text_os) override

void FormatFeature(const CFeatureItemBase &feat, IFlatTextOStream &text_os) override

void x_OrganismSource(list< string > &l, const CSourceItem &source) const

void FormatDefline(const CDeflineItem &defline, IFlatTextOStream &text_os) override

void FormatVersion(const CVersionItem &version, IFlatTextOStream &text_os) override

static const string s_GenbankMol[]

string x_FormatAccession(const CAccessionItem &acc, char separator) const

static const string s_EmblMol[]

void x_GetKeywords(const CKeywordsItem &kws, const string &prefix, list< string > &l) const

static string & x_Pad(const string &s, string &out, SIZE_TYPE width, const string &indent=kEmptyStr)

virtual list< string > & Wrap(list< string > &l, SIZE_TYPE width, const string &tag, const string &body, EPadContext where=ePara, bool htmlaware=false) const

CBioseqContext * GetContext(void)

const string & GetName(void) const

size_t GetLength(void) const

TBiomol GetBiomol(void) const

TTopology GetTopology(void) const

const string & GetDivision(void) const

virtual void AddLine(const CTempString &, const CSerialObject *=nullptr, EAddNewline=eAddNewline_Yes)

This adds its given argument, appending a newline only if the add_newline argument is eAddNewline_Yes...

virtual void AddParagraph(const list< string > &, const CSerialObject *=nullptr)

This adds a list of strings to the stream one at a time, unconditionally adding a newline to each one...

Include a standard set of the NCBI C++ Toolkit most basic headers.

std::ofstream out("events_result.xml")

main entry point for tests

static const char * str(char *buf, int n)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

const string version

version string

const CharType(& source)[N]

void DateToString(const CDate &date, string &str, EDateToString format_choice=eDateToString_regular)

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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