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NCBI C++ ToolKit: include/gui/packages/pkg_sequence_edit/editing_actions.hpp Source File

(

)

;

(

& find,

& replace, macro::CMacroFunction_EditStringQual::ESearchLoc edit_loc,

case_insensitive,

is_regex);

macro::CMacroFunction_EditStringQual::ESearchLoc

;

& ncRNA_class,

vector<CSeq_entry_Handle>* descr_context =

);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void SetRetranslateCds(bool value)

void SetExistingText(edit::EExistingText existing_text)

const string GetName(void) const

void SetTopSeqEntry(CSeq_entry_Handle seh)

virtual void FindRelated(EActionType action)=0

virtual void SetValue(const string &value)=0

edit::EExistingText m_existing_text

map< const CSeqdesc *, CSeq_entry_Handle > m_ContextForDescriptors

CRef< CSubmit_block > GetChangedSubmitBlock(void)

void ResetChangedFeatures(void)

virtual void Find(EActionType action)=0

void ConvertFrom(ECapChange cap_change, bool leave_on_original, const string &strip_name, IEditingAction *destination)

void Apply(const string &value)

virtual void Modify(EActionType action)=0

map< const CSeqdesc *, CSeq_entry_Handle > m_CreatedDescriptors

void SetConstraint(CRef< CEditingActionConstraint > constraint)

const vector< string > & GetChangedValues(void)

const map< const CSeqdesc *, CSeq_entry_Handle > & GetDeletedDescriptors(void)

CSeq_entry_Handle m_TopSeqEntry

void ResetChangedDescriptors(void)

CConstRef< objects::CSeq_submit > m_SeqSubmit

const map< CSeq_feat_Handle, CRef< CSeq_feat > > & GetChangedFeatures(void)

const map< CBioseq_Handle, CRef< CSeq_inst > > & GetChangedInstances(void)

void ConvertTo(const string &value, IEditingAction *source)

void ResetChangedIds(void)

map< const CSeqdesc *, CRef< CSeqdesc > > m_ChangedDescriptors

IEditingAction(CSeq_entry_Handle seh, const string &name, CConstRef< objects::CSeq_submit > submit=CConstRef< objects::CSeq_submit >(NULL))

macro::CMacroFunction_EditStringQual::ESearchLoc m_edit_loc

map< CSeq_feat_Handle, CRef< CSeq_feat > > m_ChangedFeatures

CRef< CCmdComposite > GetActionCommand(void)

CRef< CCmdComposite > GetRetranslateCdsCmd(const CSeq_feat_Handle fh, const CRef< CSeq_feat > feat, int &offset, bool create_general_only)

void SetCurrentSeqEntry(CSeq_entry_Handle seh)

void DoRemoveOutside(void)

void RemoveOutside(CRef< macro::CRemoveTextOptions > options)

CRef< CSubmit_block > m_ChangedSubmitBlock

virtual bool SameObject()=0

const map< const CSeqdesc *, CSeq_entry_Handle > & GetContextForDescriptors(void)

bool IsTo(EActionType action)

int CheckForExistingText(CIRef< IEditingAction > action2, EActionType action_type, edit::CParseTextOptions parse_options=edit::CParseTextOptions())

void CopyTo(const string &value, IEditingAction *source)

CIRef< IEditCommand > GetUpdateMRNAProductNameCmd(const CSeq_feat_Handle fh, const CRef< CSeq_feat > feat)

CSeq_entry_Handle m_CurrentSeqEntry

void SwapFrom(IEditingAction *destination)

CConstRef< objects::CSeq_submit > GetSeqSubmit(void)

void CopyFrom(IEditingAction *destination)

void Action(EActionType action)

vector< string > m_ChangedValues

const map< const CSeqdesc *, CRef< CSeqdesc > > & GetChangedDescriptors(void)

void SwapTo(const string &value, IEditingAction *source)

void ParseFrom(edit::CParseTextOptions parse_options, IEditingAction *destination)

CRef< macro::CRemoveTextOptions > m_remove_options

map< CSeq_feat_Handle, CSeq_entry_Handle > m_CreatedFeatures

void ResetChangedInstances(void)

void SetMaxRecords(size_t max)

const vector< string > & GetValues(void)

@ eActionType_RemoveOutside

@ eActionType_ConvertFrom

edit::CParseTextOptions m_parse_options

virtual void SwapContext(IEditingAction *source)

bool IsFrom(EActionType action)

virtual bool IsSetValue(void)=0

const map< CSeq_feat_Handle, CSeq_entry_Handle > & GetCreatedFeatures(void)

virtual void ResetValue(void)=0

CRef< CEditingActionConstraint > m_constraint

void ResetChangedValues(void)

bool IsCreateNew(EActionType action)

const map< const CSeqdesc *, CSeq_entry_Handle > & GetCreatedDescriptors(void)

virtual void ResetScope()

map< const CSeqdesc *, CSeq_entry_Handle > m_DeletedDescriptors

virtual ~IEditingAction()

void Edit(const string &find, const string &replace, macro::CMacroFunction_EditStringQual::ESearchLoc edit_loc, bool case_insensitive, bool is_regex)

void SetUpdateMRNAProduct(bool value)

void ParseTo(const string &value, IEditingAction *source)

virtual string GetValue(void)=0

bool IsNOOP(EActionType action)

void HandleValue(const string &value)

map< CBioseq_Handle, CRef< CSeq_inst > > m_ChangedInstances

Include a standard set of the NCBI C++ Toolkit most basic headers.

int CorrectForncRNASubtypes(CSeqFeatData::ESubtype subtype, string &ncRNA_class)

int GetSubtype(CFieldNamePanel *field_name_panel, string &ncRNA_class)

CIRef< IEditingAction > CreateAction(CSeq_entry_Handle seh, const string &field, CFieldNamePanel::EFieldType field_type, int subtype, const string &ncRNA_class=kEmptyStr, CConstRef< objects::CSeq_submit > submit=CConstRef< objects::CSeq_submit >(NULL))

vector< CConstRef< CObject > > GetObjects(CSeq_entry_Handle seh, const string &field, CFieldNamePanel::EFieldType field_type, int subtype, const string &ncRNA_class, CConstRef< objects::CSeq_submit > submit, CRef< CEditingActionConstraint > constraint, vector< CSeq_entry_Handle > *descr_context=nullptr)

CRef< CCmdComposite > GetReplacementCommand(CConstRef< CObject > oldobj, CRef< CObject > newobj, CScope &scope, const string &cmd_name)

CRef< CObject > GetNewObject(CConstRef< CObject > object)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const GenericPointer< typename T::ValueType > T2 value

const CharType(& source)[N]

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