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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/edit__sequence_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/widgets/edit/edit_sequence.hpp Source File

28 #ifndef _EDIT_SEQUENCE_H_ 29 #define _EDIT_SEQUENCE_H_ 45 #include <wx/bmpbuttn.h> 46 #include <wx/textctrl.h> 48 #include <wx/dialog.h> 49 #include <wx/radiobut.h> 50 #include <wx/checkbox.h> 51 #include <wx/choice.h> 55 #include <unordered_map> 72 #define ID_CEDIT_SEQUENCE wxID_ANY 73 #define SYMBOL_CEDIT_SEQUENCE_STYLE wxMINIMIZE_BOX | wxMAXIMIZE_BOX |wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL 74 #define SYMBOL_CEDIT_SEQUENCE_TITLE _("Edit Sequence"

)

75 #define SYMBOL_CEDIT_SEQUENCE_IDNAME ID_CEDIT_SEQUENCE 76 #define SYMBOL_CEDIT_SEQUENCE_SIZE wxSize(704, 504) 77 #define SYMBOL_CEDIT_SEQUENCE_POSITION wxDefaultPosition 79 #define ID_CLOSE_EDSEQ_BUTTON 11401 80 #define ID_ACCEPT_EDSEQ_BUTTON 11402 81 #define ID_GOTO_EDSEQ_BUTTON 11403 82 #define ID_SHOW_TRANSLATE_EDSEQ_MENU 11405 83 #define ID_SHOW_TRANSLATE1_EDSEQ_MENU 11406 84 #define ID_SHOW_TRANSLATE2_EDSEQ_MENU 11407 85 #define ID_SHOW_TRANSLATE_ALL_EDSEQ_MENU 11408 86 #define ID_SHOW_ONTHEFLY_EDSEQ_MENU 11409 87 #define ID_SHOW_MISMATCH_EDSEQ_MENU 11410 88 #define ID_SHOW_REVCOMP_EDSEQ_MENU 11411 89 #define ID_SHOW_FEATURES_EDSEQ_MENU 11412 90 #define ID_EDIT_COPY_EDSEQ_MENU 11413 91 #define ID_EDIT_CUT_EDSEQ_MENU 11414 92 #define ID_EDIT_PASTE_EDSEQ_MENU 11415 93 #define ID_SHOW_REVTRANSLATE_EDSEQ_MENU 11416 94 #define ID_SHOW_REVTRANSLATE1_EDSEQ_MENU 11417 95 #define ID_SHOW_REVTRANSLATE2_EDSEQ_MENU 11418 96 #define ID_SHOW_REVTRANSLATE_ALL_EDSEQ_MENU 11419 97 #define ID_CANCEL_EDSEQ_BUTTON 11420 98 #define ID_SHOW_TRANSLATE_EVERYTHING_EDSEQ_MENU 11421 99 #define ID_SHOW_TRANSLATE_NONE_EDSEQ_MENU 11422 100 #define ID_EDIT_FIND_EDSEQ_MENU 11423 101 #define ID_RETRANSLATE_EDSEQ_BUTTON 11424 102 #define ID_RANGE_EDSEQ_BUTTON 11425 103 #define READONLY_TIMER_ID 11426 108

DECLARE_EVENT_TABLE()

126 void

CreateControls();

129

wxBitmap GetBitmapResource(

const

wxString& name );

132

wxIcon GetIconResource(

const

wxString& name );

135 static bool

ShowToolTips();

137 virtual void

SetRegistryPath(

const string

& reg_path);

138 virtual void

LoadSettings();

139 virtual void

SaveSettings()

const

;

141 void

OnClose( wxCommandEvent& event );

142 void

OnCancel( wxCommandEvent& event );

143 void

OnAccept( wxCommandEvent& event );

144 void

OnGoTo( wxCommandEvent& event );

145 void

OnRange( wxCommandEvent& event );

146 void

OnFind( wxCommandEvent& event );

147 void

OnTranslate( wxCommandEvent& event );

148 void

OnTranslate1( wxCommandEvent& event );

149 void

OnTranslate2( wxCommandEvent& event );

150 void

OnTranslateAll( wxCommandEvent& event );

151 void

OnRevTranslate( wxCommandEvent& event );

152 void

OnRevTranslate1( wxCommandEvent& event );

153 void

OnRevTranslate2( wxCommandEvent& event );

154 void

OnRevTranslateAll( wxCommandEvent& event );

155 void

OnTranslateEverything( wxCommandEvent& event );

156 void

OnTranslateNone( wxCommandEvent& event );

157 void

OnOnTheFly( wxCommandEvent& event );

158 void

OnMismatch( wxCommandEvent& event );

159 void

OnComplement( wxCommandEvent& event );

160 void

OnFeatures( wxCommandEvent& event );

161 void

OnCopy( wxCommandEvent& event );

162 void

OnCut( wxCommandEvent& event );

163 void

OnPaste( wxCommandEvent& event );

165 void

ReportPos(

int

pos);

166 void

ReportRange(

int

pos1,

int

pos2);

167 void

IsClipboard(wxUpdateUIEvent &event);

168 void

IsSelection(wxUpdateUIEvent &event);

169 void

IsSelectionAndClean(wxUpdateUIEvent &event);

170 void

IsNucleotide(wxUpdateUIEvent &event);

171 void

CreateFeature ( wxCommandEvent& event);

172 void

CreateRegulatory( wxCommandEvent& event);

173 void

EnableCommit(

bool

enable);

174 void

OnRetranslate ( wxCommandEvent& event);

175 void

ShowReadOnlyWarning();

176 void

OnReadOnlyTimer(wxTimerEvent& event);

179 void

GetFeatures(

const

CSeq_loc &loc,

CScope

&scope);

223 #define ID_CFINDEDITSEQUENCE 29000 224 #define ID_TEXTCTRL_FIND_EDIT_SEQ 29001 225 #define ID_NUC_FIND_EDIT_SEQ 29002 226 #define ID_REVCOMP_FIND_EDIT_SEQ 29003 227 #define ID_TRANSFRAME_FIND_EDIT_SEQ 29004 228 #define ID_FRAMECHOICE_FIND_EDIT_SEQ 29005 229 #define ID_PREV_FIND_EDIT_SEQ 29006 230 #define ID_NEXT_FIND_EDIT_SEQ 29007 231 #define ID_DISMISS_FIND_EDIT_SEQ 29008 232 #define SYMBOL_CFINDEDITSEQUENCE_STYLE wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL 233 #define SYMBOL_CFINDEDITSEQUENCE_TITLE _("find"

)

234 #define SYMBOL_CFINDEDITSEQUENCE_IDNAME ID_CFINDEDITSEQUENCE 235 #define SYMBOL_CFINDEDITSEQUENCE_SIZE wxSize(400, 300) 236 #define SYMBOL_CFINDEDITSEQUENCE_POSITION wxDefaultPosition 247

DECLARE_EVENT_TABLE()

264 void

CreateControls();

273

wxBitmap GetBitmapResource(

const

wxString& name );

276

wxIcon GetIconResource(

const

wxString& name );

280 static bool

ShowToolTips();

281 void

OnPrev( wxCommandEvent& event );

282 void

OnNext( wxCommandEvent& event );

283 void

OnDismiss( wxCommandEvent& event );

284 void

OnClose(wxCloseEvent& event);

285 void

OnChange( wxCommandEvent& event );

287 void

FindMatchPositions(

const string

&choice);

288 void

SetHighlights();

wxMenuItem * m_translate_item_none

wxStaticText * m_readonly_warning

wxTextCtrl * m_GoTo_TextCtrl

wxMenuItem * m_translate_item_all

vector< vector< pair< TSeqPos, TSeqPos > > > m_FeatRanges

vector< pair< string, CSeqFeatData::ESubtype > > m_FeatTypes

vector< CBioseq_Handle::EVectorStrand > m_FeatStrand

vector< bool > m_Feat5Partial

vector< int > m_FeatFrames

wxButton * m_CommitButton

wxButton * m_RetranslateButton

vector< CRef< CGenetic_code > > m_GeneticCode

IUndoManager * m_UndoManager

vector< string > m_RealProt

unordered_map< int, vector< vector< pair< TSeqPos, TSeqPos > > > > m_ProtFeatRanges

wxStaticText * m_RangeLabel

wxMenuItem * m_revtranslate_item_all

wxStaticText * m_commit_warning

set< int >::iterator m_CurrentPos

wxRadioButton * m_TransFrame

wxStaticText * m_ItemOfText

namespace ncbi::objects::

Undo/Redo interface for editing operations.

Interface (functor) for object editing.

void AdjustFeatureLocations(const map< objects::CBioseq_Handle, vector< SGap >> &map_gaps, CRef< CCmdComposite > composite, bool split_gene_locations, bool break_features, bool keep_gap_length, bool create_general_only, objects::CObject_id::TId &max_feat_id, map< objects::CObject_id::TId, objects::CObject_id::TId > &old_to_new, bool create_xref_map)

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define SYMBOL_CEDIT_SEQUENCE_IDNAME

#define SYMBOL_CEDIT_SEQUENCE_POSITION

#define SYMBOL_CFINDEDITSEQUENCE_STYLE

#define SYMBOL_CFINDEDITSEQUENCE_SIZE

#define SYMBOL_CFINDEDITSEQUENCE_IDNAME

#define SYMBOL_CEDIT_SEQUENCE_SIZE

#define SYMBOL_CEDIT_SEQUENCE_STYLE

#define SYMBOL_CEDIT_SEQUENCE_TITLE

#define SYMBOL_CFINDEDITSEQUENCE_POSITION

#define SYMBOL_CFINDEDITSEQUENCE_TITLE

SBlastSequence GetSequence(const objects::CSeq_loc &sl, EBlastEncoding encoding, objects::CScope *scope, objects::ENa_strand strand=objects::eNa_strand_plus, ESentinelType sentinel=eSentinels, std::string *warnings=NULL)

Retrieves a sequence using the object manager.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_EDIT_EXPORT

const struct ncbi::grid::netcache::search::fields::SIZE size

string GetSeqTitle(CBioseq_Handle bsh)

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