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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/edit__object__seq__feat_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/edit/edit_object_seq_feat.cpp Source File

->AddPage(panel,

(

));

->AddPage(panel,

(

));

feat.

().SetImp().SetKey(

);

has_class =

;

((*it)->IsSetQual() &&

((*it)->GetQual(),

)) {

(*it)->SetVal(regulatory_class);

q->

(

);

q->

(regulatory_class);

edited_seq_feat;

);

wxTopLevelWindow* gui_widget =

wxTopLevelWindow*

(parent);

=

wxTreebook( parent,

, wxDefaultPosition, wxDefaultSize, wxBK_DEFAULT );

sub_type = seq_feat_data.

();

(sub_type.find(

) == sub_type.length()-3)

(seq_feat_data.

()) {

gui_widget->SetTitle(

(

));

help_client->

(

(

));

(seq_feat_data.

()) {

gui_widget->SetTitle(

(

));

help_client->

(

(

));

help_client->

(

(

));

help_client->

(

(

));

prot_feat = &edited_protein->

().SetProt();

has_xref =

;

((*it)->IsSetData() && (*it)->GetData().IsProt()) {

prot_feat = &((*it)->SetData().SetProt());

xref->SetData().SetProt();

edited_seq_feat.

().push_back(xref);

prot_feat = &(xref->SetData().SetProt());

->AddPage(panel,

(

));

->AddPage(panel,

(

));

gui_widget->SetTitle(

(

));

help_client->

(

(

));

}

(seq_feat_data.

()) {

gui_widget->SetTitle(

(

));

(seq_feat_data.

()) {

->AddPage(panel,

(

));

gui_widget->SetTitle(wxString(seq_feat_data.

().

()));

gui_widget->SetTitle(

(

));

help_client->

(

(

));

(seq_feat_data.

()) {

->AddPage(panel,

(

));

->AddPage(panel,

(

));

gui_widget->SetTitle(

(

));

(seq_feat_data.

()) {

->AddSubPage(panel,

(

));

gui_widget->SetTitle(

(

));

(seq_feat_data.

()) {

gui_widget->SetTitle(

(

));

(seq_feat_data.

()) {

gui_widget->SetTitle(

(

));

(seq_feat_data.

()) {

gui_widget->SetTitle(

(

));

->AddPage(sec_panel,

(

));

gui_widget->SetTitle(

(

));

gui_widget->SetTitle(

(

));

->AddPage (panel,

(

));

(seq_feat_data.

()) {

(

= 0;

<

->GetPageCount(); ++

) {

->AddSubPage (panel,

(

));

->AddSubPage (panel,

(

));

->AddSubPage (panel,

(

));

->AddSubPage (panel,

(

));

(

= 0;

<

->GetPageCount(); ++

) {

->GetPage(

)->TransferDataToWindow();

(gene_start_pos == cds_start_pos) {

(gene_stop_pos == cds_stop_pos) {

bsh =

->GetBioseqHandle(loc);

bsh =

->GetBioseqHandle(new_loc);

origin_start =

;

origin_stop =

;

origin_start =

;

(stop == length - 1)

intervals.

(make_pair(start, stop));

(origin_start && origin_stop && !intervals.

())

int_stop = intervals.rbegin()->second;

(int_stop > length)

before_origin->

().SetFrom(int_start);

before_origin->

().SetTo(length - 1);

before_origin->

().SetId().Assign(*new_loc.

());

after_origin->

().SetFrom(0);

after_origin->

().SetTo(int_stop);

after_origin->

().SetId().Assign(*new_loc.

());

adjusted_gene->

().SetMix().Set().clear();

adjusted_gene->

().SetMix().Set().push_back(before_origin);

adjusted_gene->

().SetMix().Set().push_back(after_origin);

adjusted_gene->

().SetInt().SetFrom(int_start);

adjusted_gene->

().SetInt().SetTo(int_stop);

(

loc_iter(new_loc); loc_iter; ++loc_iter)

(loc_iter.IsSetStrand())

strands.

(loc_iter.GetStrand());

(strands.

() > 1)

update_gene_span =

;

(

= 0;

<

->GetPageCount(); ++

) {

(cdsProductPanel) {

(!update_gene_span && updated_gene->

(old_gene))

adjusted_gene->

(*updated_gene);

(

loc_iter(new_loc); loc_iter; ++loc_iter)

(loc_iter.IsSetStrand())

strands.

(loc_iter.GetStrand());

idhs.

(loc_iter.GetSeq_id_Handle());

(strands.

() > 1 || idhs.

() > 1)

adjusted_gene->

().SetInt().SetId().Assign(*

);

(!adjusted_gene->

(old_gene)) {

(

= 0;

<

->GetPageCount(); ++

) {

(

= 0;

<

->GetPageCount(); ++

) {

edited_seq_feat.

().SetImp().SetKey(

);

(

= 0;

<

->GetPageCount(); ++

) {

(

= 0;

<

->GetPageCount(); ++

) {

(

= 0;

<

->GetPageCount(); ++

) {

(

= 0;

<

->GetPageCount(); ++

) {

(inferencePanel) {

(

= 0;

<

->GetPageCount(); ++

) {

(experimentsPanel)

(experimentsPanel) {

(

= 0;

<

->GetPageCount(); ++

) {

(citationsPanel) {

has_xref =

;

((*it)->IsSetId() && (*it)->GetId().IsLocal() && (*it)->GetId().GetLocal().IsId()) {

update_mrna_span =

;

update_mrna_product =

;

(

= 0;

<

->GetPageCount(); ++

) {

(!cdsProteinPanel) {

(!cdsProductPanel) {

(cdsProteinPanel && cdsProductPanel && locPanel) {

(cdsProteinPanel) {

(cdsProductPanel) {

(update_mrna_product || update_mrna_span) {

new_mrna->

(*mrna);

any_change =

;

(update_mrna_product) {

new_prot_product =

;

orig_mrna_product =

;

(!

(new_prot_product, orig_mrna_product)

new_mrna->

().SetRna().SetExt().SetName(new_prot_product);

(update_mrna_span) {

(

= 0;

<

->GetPageCount(); ++

) {

(transl_except_panel)

(transl_except_panel) {

any_actions =

;

* orig_protein =

;

(

= 0;

<

->GetPageCount(); ++

) {

cds.

().SetImp().SetKey(

);

any_actions =

;

any_actions =

;

(

= 0;

<

->GetPageCount(); ++

) {

(product_seq && !ShouldCreateNewProductSeq) {

edited_product->

(*product_seq);

any_actions =

;

edited_protein.

().SetInt().SetId().Assign(*(edited_product->

().front()));

edited_protein.

().SetInt().SetFrom(0);

.BasicCleanup(edited_protein);

any_actions =

;

cds_change =

;

any_actions =

;

found_existing =

;

((*it)->IsSetData() && (*it)->GetData().IsProt()) {

(*it)->SetData().SetProt().Assign(edited_protein.

().

());

found_existing =

;

(!found_existing) {

prot_xref->SetData().SetProt().Assign(edited_protein.

().

());

cds.

().push_back(prot_xref);

any_actions =

;

}

(ShouldCreateNewProductSeq) {

bsh =

->GetBioseqHandle(loc_iter.GetSeq_id());

(!new_product->

() || new_product->

().empty()) {

new_product->

().push_back(product_id);

product_id = new_product->

().front();

prot_entry->

(*new_product);

->Assign(*orig_protein);

->SetLocation().Assign(*keep_loc);

(partial5 || partial3) {

->SetPartial(

);

((*it)->IsSetData() && (*it)->GetData().IsProt()) {

->SetData().SetProt().Assign((*it)->GetData().GetProt());

(cds.

().empty()) {

any_actions =

;

(CSeq_feat::TQual::iterator qual = edited_feat.

().begin(); qual != edited_feat.

().end(); ++qual)

((*qual)->IsSetQual() && !(*qual)->GetQual().empty() && (*qual)->IsSetVal() && !(*qual)->GetVal().empty())

(!mandatory.

())

(

q : mandatory)

<<

;

<<

;

answer = wxMessageBox(

,

(

), wxYES_NO | wxICON_QUESTION);

(answer != wxYES)

(

= 0;

<

->GetPageCount(); ++

) {

(!

->GetPage(

)->TransferDataFromWindow()) {

fh =

->GetSeq_featHandle(seq_feat);

(

= 0;

<

->GetPageCount(); ++

) {

edited_seq_feat.

().SetPub(*pub);

(

= 0;

<

->GetPageCount(); ++

) {

is_biosrc =

;

(

= 0;

<

->GetPageCount(); ++

) {

(biosource_panel)

(biosource_panel) {

(

= 0;

<

->GetPageCount(); ++

) {

(

= 0;

<

->GetPageCount(); ++

) {

(

= 0;

<

->GetPageCount(); ++

) {

region = regionPanel->

();

edited_seq_feat.

().SetImp().SetKey(

);

(!region.empty())

edited_seq_feat.

().SetRegion(region);

(

= 0;

<

->GetPageCount(); ++

) {

edited_seq_feat.

().SetBond(bond);

(

= 0;

<

->GetPageCount(); ++

) {

(

= 0;

<

->GetPageCount(); ++

) {

(secondary_struc_panel)

(secondary_struc_panel) {

edited_seq_feat.

().SetPsec_str(struc);

(

= 0;

<

->GetPageCount(); ++

) {

(generic_props_panel)

modify_pseudo =

;

pseudo_choice;

modify_pseudo =

;

(edited_seq_feat.

() && edited_seq_feat.

().empty()) {

.BasicCleanup(edited_seq_feat);

(

= 0;

<

->GetPageCount(); ++

) {

(addedGenePanel) {

}

(new_gene) {

bsh =

.GetScope().GetBioseqHandle(loc_iter.GetSeq_id());

(handle_product) {

unique_ptr<CObjectOStream>

*

<< edited_seq_feat;

wxPanel* panel_parent =

wxPanel*

(

->GetParent());

enable_import =

;

enable_export =

;

User-defined methods of the data storage class.

@ eExtreme_Positional

numerical value

@ eExtreme_Biological

5' and 3'

User-defined methods of the data storage class.

bool AdjustProteinFeaturePartialsToMatchCDS(CSeq_feat &new_prot, const CSeq_feat &cds)

AdjustProteinFeaturePartialsToMatchCDS A function to change an existing MolInfo to match a coding reg...

CRef< objects::CSeq_id > GetNewProtId(objects::CBioseq_Handle bsh, int &offset, string &id_label, bool general_only)

bool IsGeneralIdProtPresent(objects::CSeq_entry_Handle tse)

CRef< CGenetic_code > GetGeneticCodeForBioseq(CBioseq_Handle bh)

GetGeneticCodeForBioseq A function to construct the appropriate CGenetic_code object to use when cons...

void PopulateBioSource(objects::CBioSource &source)

TSeqPos GetLength(void) const

CSeqFeatData::EBond GetBond()

void SetExceptions(objects::CCdregion &cds)

bool ShouldUpdatemRNAProduct()

virtual bool TransferDataFromWindow()

void SetProduct(objects::CSeq_feat &feat)

bool ShouldUpdatemRNALocation()

bool ShouldCreateNewProductSeq()

void SetProtein(objects::CBioseq &bioseq)

bool ShouldUpdateGeneLocation()

void SetProductId(const string &val)

CRef< objects::CSeq_id > GetProductId()

void SetCitations(objects::CSeq_feat &seq_feat)

void AddCommand(IEditCommand &command)

void PopulateDbxrefs(objects::CSeq_feat &seq_feat)

CRef< CCmdComposite > x_HandleCdsProduct(const objects::CSeq_feat &old_cds, objects::CSeq_feat &cds)

void x_SetGbQuals(objects::CSeq_feat &edited_feat)

void x_AdjustCircularGene(CRef< objects::CSeq_feat > adjusted_gene, const objects::CSeq_loc &new_loc)

void x_SetCitations(objects::CSeq_feat &edited_feat)

void x_SetTranslExcept(objects::CSeq_feat &cds)

void x_SetInferences(objects::CSeq_feat &edited_feat)

virtual IEditCommand * GetEditCommand()

After placing the window in the Edit Object Dialog ShowModal() method of the dialog is called.

objects::CSeq_feat & x_GetSeqFeatCopy()

void x_ConvertCommentToMiscFeat(objects::CSeq_feat &edited_seq_feat)

void x_AdjustLocation(objects::CSeq_feat &edited_feat)

void x_AddCodingRegionProteinNamePanel(objects::CProt_ref &prot)

CRef< CSerialObject > m_EditedFeature

bool x_IsCircular(const objects::CSeq_loc &loc)

void x_SetIdentifiers(objects::CSeq_feat &edited_feat)

virtual wxWindow * CreateWindow(wxWindow *parent)

creates a child (not top level) windows that can contain whatever controls/subwindows etc.

objects::CSeq_entry_Handle m_SEH

void x_SetExperiments(objects::CSeq_feat &edited_feat)

CRef< objects::CScope > m_Scope

CIRef< IEditCommand > m_EditAction

void x_AddCodingRegionProteinPanels(objects::CProt_ref &prot, objects::CSeq_feat *edited_protein)

CIRef< IEditCommand > x_AdjustGene(const objects::CSeq_feat &old_gene, const objects::CSeq_loc &old_loc, const objects::CSeq_loc &new_loc, CRef< objects::CSeq_feat > updated_gene)

CRef< CSerialObject > m_EditedProtein

void x_SetCrossRefs(objects::CSeq_feat &edited_feat)

void OnPageChange(wxBookCtrlEvent &event)

wxWindow * CreateWindowImpl(wxWindow *parent, objects::CSeq_feat &edited_seq_feat)

CIRef< IEditCommand > x_UpdatemRNA(const objects::CSeq_feat &cds)

void PopulateGBQuals(objects::CSeq_feat &seq_feat)

CConstRef< objects::CSeq_feat > GetGeneToEdit()

void SetModifyPseudo(bool modify_pseudo, const string &pseudo_choice)

CRef< objects::CSeq_feat > GetNewGene()

CRef< objects::CSeq_feat > GetUpdatedGene()

void PopulateGBQuals(objects::CSeq_feat &seq_feat)

static bool PanelNeeded(objects::CSeq_feat &seq_feat)

@Gb_qual.hpp User-defined methods of the data storage class.

bool PseudoSelectionChanged() const

void PopulateIdentifiers(objects::CSeq_feat &seq_feat)

virtual bool IsImportEnabled(void)

virtual bool IsExportEnabled(void)

virtual void EnableImport(bool enable)=0

virtual void EnableExport(bool enable)=0

void PopulateImpFeat(objects::CSeq_feat &seq_feat)

void PopulateGBQuals(objects::CSeq_feat &seq_feat)

void PopulateLocAndGC(objects::CBioSource &source)

CRef< objects::CSeq_loc > GetSeq_loc() const

bool ShouldUpdatemRNALocation()

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

Base class for all object manager exceptions.

CRef< objects::CPubdesc > GetPubdesc() const

void SetGBQualPanel(CGBQualPanel *gbqual_panel)

bool GetConvertToMiscFeat(void)

void SetSecondaryStructure(objects::CSeqFeatData::EPsec_str struc)

objects::CSeqFeatData::EPsec_str GetSecondaryStructure()

static const string & GetRegulatoryClass(ESubtype subtype)

ESubtype GetSubtype(void) const

string GetKey(EVocabulary vocab=eVocabulary_full) const

const TQualifiers & GetMandatoryQualifiers(void) const

Get the list of all mandatory qualifiers for the feature.

void SetCdregion(TCdregion &v)

static EQualifier GetQualifierType(CTempString qual)

convert qual string to enumerated value

static CTempString GetQualifierAsString(EQualifier qual)

Convert a qualifier from an enumerated value to a string representation or empty if not found.

static bool IsRegulatory(ESubtype subtype)

namespace ncbi::objects::

Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order.

Base class for all serializable objects.

CSeqFeatData::ESite GetSite()

void TransferToOrgRef(objects::COrg_ref &org)

void TransferFromOrgRef(const objects::COrg_ref &org)

CSeq_feat_Handle GetFeatureWithId(CSeqFeatData::E_Choice type, TFeatureIdInt id) const

Interface (functor) for object editing.

virtual void SetHelpUrl(const wxString &url)=0

constexpr const_iterator begin() const noexcept

constexpr const_iterator end() const noexcept

iterator_bool insert(const value_type &val)

const_iterator begin() const

void SetMolinfoForProtein(CRef< objects::CSeq_entry > protein, bool partial5, bool partial3)

CRef< objects::CSeq_feat > AddEmptyProteinFeatureToProtein(CRef< objects::CSeq_entry > protein, bool partial5, bool partial3)

void RemapOtherProtFeats(const objects::CSeq_feat &old_cds, objects::CSeq_feat &cds, objects::CBioseq_Handle bh, CRef< CCmdComposite > composite, bool &any_actions)

bool s_ShouldSetFeaturePartial(const CSeq_loc &loc, CRef< CScope > scope)

bool s_ShouldSetGenePartialStart(const CSeq_loc &gene_loc, const CSeq_loc &cds_loc)

const char * kTransSplicing

void ConvertRegulatoryFeature(CSeq_feat &feat)

CConstRef< CSeq_feat > s_GetmRNAForCDS(const CSeq_feat &cds, const CSeq_feat &orig_cds, CScope &scope)

static const CBioseq * GetCDSProductSeq(const CSeq_feat *feat, CScope &scope)

bool s_ShouldSetGenePartialStop(const CSeq_loc &gene_loc, const CSeq_loc &cds_loc)

static const CSeq_feat * GetFeatureProtein(const CSeq_feat *feat, CScope &scope)

std::ofstream out("events_result.xml")

main entry point for tests

static void cleanup(void)

static const char location[]

unsigned int TSeqPos

Type for sequence locations and lengths.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const string & GetMsg(void) const

Get message string.

objects::CSeq_feat_Handle GetSeqFeatHandleForBadLocFeature(const objects::CSeq_feat &feat, objects::CScope &scope)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

virtual const CTypeInfo * GetThisTypeInfo(void) const =0

virtual bool Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const

Check if both objects contain the same values.

@ eSerial_AsnText

ASN.1 text.

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

@ eFasta

Tagged ID in NCBI's traditional FASTA style.

bool IsPartialStart(ESeqLocExtremes ext) const

check start or stop of location for e_Lim fuzz

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Override Assign() to incorporate cache invalidation.

TSeqPos GetStart(ESeqLocExtremes ext) const

Return start and stop positions of the seq-loc.

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

bool IsPartialStop(ESeqLocExtremes ext) const

TSeqPos GetStop(ESeqLocExtremes ext) const

static CObjectOStream * Open(ESerialDataFormat format, CNcbiOstream &outStream, bool deleteOutStream)

Create serial object writer and attach it to an output stream.

CMappedFeat GetBestOverlappingFeat(const CMappedFeat &feat, CSeqFeatData::ESubtype need_subtype, sequence::EOverlapType overlap_type, CFeatTree *feat_tree=0, const SAnnotSelector *base_sel=0)

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

int SeqLocPartialCheck(const CSeq_loc &loc, CScope *scope)

sequence::ECompare Compare(const CSeq_loc &loc1, const CSeq_loc &loc2, CScope *scope)

Returns the sequence::ECompare containment relationship between CSeq_locs.

@ eSeqlocPartial_Internal

@ eSeqlocPartial_Nointernal

@ fCompareOverlapping

Check if seq-locs are overlapping.

@ eOverlap_CheckIntRev

1st is a subset of 2nd with matching boundaries

@ eContains

First CSeq_loc contains second.

@ eSame

CSeq_locs contain each other.

@ eContained

First CSeq_loc contained by second.

@ eNoOverlap

CSeq_locs do not overlap or abut.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

const CTSE_Handle & GetTSE_Handle(void) const

Get CTSE_Handle of containing TSE.

CConstRef< CBioseq > GetCompleteBioseq(void) const

Get the complete bioseq.

virtual CConstRef< CSeq_feat > GetSeq_feat(void) const

TSeqPos GetBioseqLength(void) const

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

TInst_Topology GetInst_Topology(void) const

bool IsSetInst_Topology(void) const

CSeq_entry_Handle GetTopLevelEntry(void) const

Get top level Seq-entry handle.

const CSeq_loc & GetLocation(void) const

const CSeq_feat & GetOriginalFeature(void) const

Get original feature with unmapped location/product.

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

TObjectPtr Create(CObjectMemoryPool *memoryPool=0) const

Create object of this type on heap (can be deleted by operator delete)

static const char label[]

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

const TName & GetName(void) const

Get the Name member data.

bool IsSetName(void) const

protein name Check if a value has been assigned to Name data member.

bool IsSetExt(void) const

generic fields for ncRNA, tmRNA, miscRNA Check if a value has been assigned to Ext data member.

bool IsGen(void) const

Check if variant Gen is selected.

const TGen & GetGen(void) const

Get the variant data.

const TName & GetName(void) const

Get the variant data.

bool IsSetClass(void) const

for ncRNAs, the class of non-coding RNA: examples: antisense_RNA, guide_RNA, snRNA Check if a value h...

const TExt & GetExt(void) const

Get the Ext member data.

bool IsName(void) const

Check if variant Name is selected.

const TClass & GetClass(void) const

Get the Class member data.

TXref & SetXref(void)

Assign a value to Xref data member.

void SetQual(const TQual &value)

Assign a value to Qual data member.

const TKey & GetKey(void) const

Get the Key member data.

bool IsSetComment(void) const

Check if a value has been assigned to Comment data member.

void ResetPartial(void)

Reset Partial data member.

EPsec_str

protein secondary structure

bool IsSetData(void) const

the specific data Check if a value has been assigned to Data data member.

bool IsSetQual(void) const

qualifiers Check if a value has been assigned to Qual data member.

TPsec_str GetPsec_str(void) const

Get the variant data.

bool IsBond(void) const

Check if variant Bond is selected.

bool IsProt(void) const

Check if variant Prot is selected.

void SetLocation(TLocation &value)

Assign a value to Location data member.

bool IsCdregion(void) const

Check if variant Cdregion is selected.

bool IsImp(void) const

Check if variant Imp is selected.

void SetComment(const TComment &value)

Assign a value to Comment data member.

void SetPartial(TPartial value)

Assign a value to Partial data member.

const TQual & GetQual(void) const

Get the Qual member data.

bool IsSetKey(void) const

Check if a value has been assigned to Key data member.

bool IsSetXref(void) const

cite other relevant features Check if a value has been assigned to Xref data member.

const TLocation & GetLocation(void) const

Get the Location member data.

void SetExcept(TExcept value)

Assign a value to Except data member.

bool IsGene(void) const

Check if variant Gene is selected.

const TData & GetData(void) const

Get the Data member data.

const TExcept_text & GetExcept_text(void) const

Get the Except_text member data.

bool IsPub(void) const

Check if variant Pub is selected.

void ResetData(void)

Reset Data data member.

bool IsSetExcept_text(void) const

explain if except=TRUE Check if a value has been assigned to Except_text data member.

bool IsPsec_str(void) const

Check if variant Psec_str is selected.

void SetData(TData &value)

Assign a value to Data data member.

const TProduct & GetProduct(void) const

Get the Product member data.

const TComment & GetComment(void) const

Get the Comment member data.

void SetVal(const TVal &value)

Assign a value to Val data member.

bool IsBiosrc(void) const

Check if variant Biosrc is selected.

void SetExcept_text(const TExcept_text &value)

Assign a value to Except_text data member.

const TProt & GetProt(void) const

Get the variant data.

bool IsSite(void) const

Check if variant Site is selected.

const TXref & GetXref(void) const

Get the Xref member data.

vector< CRef< CSeqFeatXref > > TXref

void ResetProduct(void)

Reset Product data member.

vector< CRef< CGb_qual > > TQual

bool IsComment(void) const

Check if variant Comment is selected.

void ResetXref(void)

Reset Xref data member.

const TRna & GetRna(void) const

Get the variant data.

TQual & SetQual(void)

Assign a value to Qual data member.

bool IsSetProduct(void) const

product of process Check if a value has been assigned to Product data member.

bool IsRna(void) const

Check if variant Rna is selected.

bool IsRegion(void) const

Check if variant Region is selected.

void ResetQual(void)

Reset Qual data member.

const TImp & GetImp(void) const

Get the variant data.

bool IsSetLocation(void) const

feature made from Check if a value has been assigned to Location data member.

TSeq & SetSeq(void)

Select the variant.

TRepr GetRepr(void) const

Get the Repr member data.

TId & SetId(void)

Assign a value to Id data member.

const TInst & GetInst(void) const

Get the Inst member data.

bool IsSetRepr(void) const

Check if a value has been assigned to Repr data member.

const TId & GetId(void) const

Get the Id member data.

bool IsSetInst(void) const

the sequence data Check if a value has been assigned to Inst data member.

bool IsSetId(void) const

equivalent identifiers Check if a value has been assigned to Id data member.

void TestForNonAsciiText(wxWindow *win)

#define FOR_EACH_SEQFEATXREF_ON_SEQFEAT(Itr, Var)

FOR_EACH_SEQFEATXREF_ON_SEQFEAT EDIT_EACH_SEQFEATXREF_ON_SEQFEAT.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

CRef< CCmdComposite > GetSynchronizeProductMolInfoCommand(objects::CScope &scope, const objects::CSeq_feat &cds)

CRef< CCmdComposite > CreateOrAdjustProteinFeature(objects::CBioseq_Handle product, objects::CSeq_feat &cds, bool &cds_change)

wxString ToWxString(const string &s)

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