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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/dump__asn__index_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/data_loaders/asn_cache/dump_asn_index.cpp Source File

& timestamp,

( root_dir.

() ) {

( entry.IsSet() ) {

}

( entry.IsSeq() ) {

& bio_seq = entry.GetSeq();

);

);

(desc.

()) {

((*dbiter)->GetDb() ==

) {

taxid = (*dbiter)->GetTag().GetId();

header_stream << header << flush;

size_t IndexABioseq(const objects::CBioseq &bioseq, CAsnIndex &index, CAsnIndex::TTimestamp timestamp, CAsnIndex::TChunkId chunk_id, CAsnIndex::TOffset offset, CAsnIndex::TSize size)

void OpenForWrite(const std::string &root_path="")

void Write(const CCache_blob &cache_blob)

unsigned int GetChunkSerialNum() const

objects::CCache_blob m_CacheBlob

CTempStopWatch< EIsInstantiated > m_BuildIndexEntrySW

CTempStopWatch< EIsInstantiated > m_DumpSW

void x_BuildIndexAndSeqIdInfo(const objects::CSeq_entry &entry)

std::string m_RootDirPath

void DumpBlob(const CRef< objects::CSeq_entry > entry, const CTime &timestamp, SSatSatKey blob_id)

CTempStopWatch< EIsInstantiated > m_CreateBlobSW

Uint4 x_GetTaxId(const objects::CBioseq &bio_seq)

CSeqIdChunkFile m_SeqIdChunkFile

CTempStopWatch< EIsInstantiated > m_WriteBlobSW

void x_CreateBlob(const objects::CSeq_entry &entry, const CTime &timestamp)

void OpenForWrite(const std::string &root_path="")

void Write(const objects::CBioseq::TId &seq_ids)

Define CVersionInfo, a version info storage class.

const Uint2 kMinorVersion

const Uint2 kMajorVersion

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

#define NCBI_ERRNO_CODE_WRAPPER

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define NCBI_ERRNO_STR_WRAPPER

void Info(CExceptionArgs_Base &args)

bool CreatePath(TCreateFlags flags=fCreate_Default) const

Create the directory path recursively possibly more than one at a time.

virtual bool Exists(void) const

Check if directory "dirname" exists.

static string ConcatPath(const string &first, const string &second)

Concatenate two parts of the path for the current OS.

uint32_t Uint4

4-byte (32-bit) unsigned integer

int64_t Int8

8-byte (64-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

time_t GetTimeT(void) const

Get time in time_t format.

const TOrg & GetOrg(void) const

Get the Org member data.

bool IsSetDb(void) const

ids in taxonomic or culture dbases Check if a value has been assigned to Db data member.

vector< CRef< CDbtag > > TDb

const TDb & GetDb(void) const

Get the Db member data.

list< CRef< CSeq_entry > > TSeq_set

list< CRef< CSeqdesc > > Tdata

const TSource & GetSource(void) const

Get the variant data.

const TId & GetId(void) const

Get the Id member data.

const Tdata & Get(void) const

Get the member data.

const TOrg & GetOrg(void) const

Get the variant data.

bool IsSetDescr(void) const

descriptors Check if a value has been assigned to Descr data member.

bool IsSet(void) const

Check if a value has been assigned to data member.

E_Choice Which(void) const

Which variant is currently selected.

const TDescr & GetDescr(void) const

Get the Descr member data.

@ e_Org

if all from one organism

@ e_Source

source of materials, includes Org-ref

const string version

version string

const struct ncbi::grid::netcache::search::fields::SIZE size

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

Defines: CTimeFormat - storage class for time format.

Reader-writer based streams.

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