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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/descr__apply_8cpp_source.html below:

NCBI C++ ToolKit: src/app/table2asn/descr_apply.cpp Source File

48 const string

& message,

86 string msg

"Molinfo is not a valid set descriptor. Skipping."

;

96 string

descName = descriptor.

IsSource

() ?

99 string msg

= descName +

100 "descriptors can only reside on a bioseq or a nuc-prot set. Skipping."

;

115 if

(descriptors.empty()) {

121 string msg

"Cannot apply descriptors to set of unknown class"

;

126 const auto

setClass = bioseqSet.

GetClass

();

127 auto

src_it = descriptors.begin();

128 auto

& dest = bioseqSet.

SetDescr

().Set();

130 while

(src_it != descriptors.end()) {

131 auto

pDescriptor = *src_it;

136

dest.push_back(*src_it);

146 if

(seqEntry.

IsSet

()) {

150 if

(seqEntry.

IsSeq

()) {

151 for

(

auto

pDescriptor : descriptors) {

152

seqEntry.

SetDescr

().Set().emplace_back(pDescriptor);

static CLineError * Create(EProblem eProblem, EDiagSev eSeverity, const std::string &strSeqId, unsigned int uLine, const std::string &strFeatureName=string(""), const std::string &strQualifierName=string(""), const std::string &strQualifierValue=string(""), const std::string &strErrorMessage=string(""), const TVecOfLines &vecOfOtherLines=TVecOfLines())

Use this because the constructor is protected.

void SetDescr(CSeq_descr &value)

virtual bool PutError(const ILineError &)=0

Store error in the container, and return true if error was stored fine, and return false if the calle...

@ eProblem_GeneralParsingError

Include a standard set of the NCBI C++ Toolkit most basic headers.

static void sReportError(ILineErrorListener *pEC, EDiagSev severity, const string &message, ILineError::EProblem problemType=ILineError::eProblem_GeneralParsingError)

static bool s_IsDBLink(const CSeqdesc &descriptor)

void g_ApplyDescriptors(const list< CRef< CSeqdesc >> &descriptors, CSeq_entry &seqEntry, ILineErrorListener *pEC)

static void sApplyDescriptors(const list< CRef< CSeqdesc >> &descriptors, CBioseq_set &bioseqSet, ILineErrorListener *pEC)

static bool sReportInvalidDescriptor(const CBioseq_set::EClass setClass, const CSeqdesc &descriptor, ILineErrorListener *pEC)

EDiagSev

Severity level for the posted diagnostics.

@ eDiag_Warning

Warning message.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool IsSetClass(void) const

Check if a value has been assigned to Class data member.

TSet & SetSet(void)

Select the variant.

TClass GetClass(void) const

Get the Class member data.

bool IsSeq(void) const

Check if variant Seq is selected.

bool IsSet(void) const

Check if variant Set is selected.

void SetDescr(TDescr &value)

Assign a value to Descr data member.

@ eClass_nuc_prot

nuc acid and coded proteins

const TUser & GetUser(void) const

Get the variant data.

bool IsMolinfo(void) const

Check if variant Molinfo is selected.

bool IsSource(void) const

Check if variant Source is selected.

bool IsUser(void) const

Check if variant User is selected.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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