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NCBI C++ ToolKit: src/gui/widgets/hit_matrix/density_map_ds.cpp Source File

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window = float(pos_stop - start) / float(

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=

(pos_start, pos_stop, window);

virtual double GetValue(size_t index)

value of the sample with the given index

virtual double GetStart() const

virtual double GetStep() const

discrete size in model space

static void GetGraphTypes(vector< string > &types)

virtual void Update(double start, double stop)

virtual string GetLabel() const

virtual double GetMaxValue()

CDensityMapDS(objects::CBioseq_Handle &handle, const string &type)

CDensityMapDS.

virtual size_t GetCount() const

number of samples in the series

objects::CBioseq_Handle m_Bioseq

objects::SAnnotSelector x_GetAnnotSelector()

virtual double GetLimit() const

returns start of the series in model space

virtual double GetStop() const

static const char * kGraphTypes[]

static const struct type types[]

unsigned int TSeqPos

Type for sequence locations and lengths.

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

CntType AddFeatures(const objects::CBioseq_Handle &handle, objects::SAnnotSelector sel)

All features on this bioseq selected by sel in the range of this.

TSeqPos GetBioseqLength(void) const

SAnnotSelector & SetFeatType(TFeatType type)

Set feature type (also set annotation type to feat)

SAnnotSelector & SetResolveMethod(EResolveMethod resolve_method)

SetResolveMethod() controls visibility of subsegments depending on whether it's packaged together wit...

SAnnotSelector & ResetAnnotsNames(void)

Select annotations from all Seq-annots.

SAnnotSelector & SetOverlapType(EOverlapType overlap_type)

Set overlap type.

SAnnotSelector & SetAnnotType(TAnnotType type)

Set annotation type (feat, align, graph)

SAnnotSelector & SetFeatSubtype(TFeatSubtype subtype)

Set feature subtype (also set annotation and feat type)

@ eOverlap_TotalRange

overlapping of total ranges only

@ eResolve_All

Search annotations for all referenced sequences.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

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