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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/denseg_ci.cpp Source File

CDensegSegment::operator

(

)

!IsInvalidType();

}

(row_from == -1) {

row_pos = starts[2 * pre_seg +

] + lens[pre_seg];

row_pos = starts[2 * next_seg +

];

row_rg.

(row_pos + 1, row_pos + 1);

( !*

)

;

: m_Flags(eAllSegments)

, m_PreToPos_Anchor(-1)

, m_AnchorRow(anchor_row)

, m_TotalRange(TSignedRange::GetWhole())

TSignedRange& range)

, m_AnchorRow(anchor_row)

, m_TotalRange(range)

CDenseg_CI::operator

(

)

m_Aln && m_Segment;

(

(*

) ==

(it)) {

(

(*

) ==

(it)) {

virtual const TSignedRange & GetRange(void) const

Get the selected row range.

virtual TSegTypeFlags GetType(void) const

Get current segment type.

virtual const TSignedRange & GetAlnRange(void) const

Get alignment range for the segment.

CDensegSegment(void)

CDensegSegment - IAlnSegment implementation for CAlnMap::CAlnChunk.

Implementation of IAlnSegmentIterator for CDense_seg.

TSignedRange m_TotalRange

void x_InitIterator(void)

virtual const value_type * operator->(void) const

virtual IAlnSegmentIterator & operator++(void)

Advance to the next segment.

bool x_Equals(const CDenseg_CI &other) const

virtual IAlnSegmentIterator * Clone(void) const

Create a copy of the iterator.

TSignedSeqPos m_PreToPos_Anchor

void x_InitSegment(void)

CDenseg_CI.

CDenseg_CI(void)

Create 'empty' iterator.

void x_CheckSegment(void)

virtual ~CDenseg_CI(void)

virtual bool operator!=(const IAlnSegmentIterator &it) const

virtual bool operator==(const IAlnSegmentIterator &it) const

Compare iterators.

virtual const value_type & operator*(void) const

CConstRef< objects::CSeq_align > m_Aln

Alignment segment iterator interface.

@ eSkipInserts

Iterate segments where at least some rows are aligned (including gap segments)

@ eInsertsOnly

Iterate only ranges not participating in the alignment (unaligned segments)

@ eAllSegments

Iterate all segments.

@ eSkipGaps

Skip gap segments (show only aligned ranges)

Alignment segment interface.

@ fAligned

Aligned segment.

@ fInvalid

The iterator is in bad state.

@ fIndel

Either anchor or the selected row is not present in the segment.

@ fReversed

The selected row is reversed (relative to the anchor).

bool IsAligned(void) const

USING_SCOPE(ncbi::objects)

int TSignedSeqPos

Type for signed sequence position.

void Reset(void)

Reset reference object.

bool NotEmpty(void) const

position_type GetToOpen(void) const

static TThisType GetEmpty(void)

TThisType & SetOpen(position_type from, position_type toOpen)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

const TStarts & GetStarts(void) const

Get the Starts member data.

const TLens & GetLens(void) const

Get the Lens member data.

vector< TSignedSeqPos > TStarts

TNumseg GetNumseg(void) const

Get the Numseg member data.

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig

#define row(bind, expected)

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