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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/defline__item_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/format/defline_item.cpp Source File

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84

sequence::CDeflineGenerator Defliner;

87

sequence::CDeflineGenerator::TUserFlags

flags

= 0;

88  if

(

ctx

.Config().DoNotUseAutoDef() ) {

89  flags

|= sequence::CDeflineGenerator::fDoNotUseAutoDef;

91  if

(

ctx

.Config().IgnoreExistingTitle() ) {

92  flags

|= sequence::CDeflineGenerator::fIgnoreExisting;

94  if

(

ctx

.Config().ShowDeflineModifiers() ) {

95  flags

|= sequence::CDeflineGenerator::fShowModifiers;

97  if

(

ctx

.Config().LeavePrefixSuffix() ) {

98  flags

|= sequence::CDeflineGenerator::fLeavePrefixSuffix;

100  if

(

ctx

.UsingSeqEntryIndex() ) {

107  if

(! Defliner.UsePDBCompoundForDefline()) {

108  ctx

.SetPDBCompoundForComment(

true

);

110  if

(

ctx

.Config().ShowDeflineModifiers() ) {

void x_GatherInfo(CBioseqContext &ctx) override

EItem GetItemType() const override

const string & GetDefline(void) const

void Format(IFormatter &formatter, IFlatTextOStream &text_os) const override

void x_SetObject(const CSerialObject &obj)

virtual void FormatDefline(const CDeflineItem &defline, IFlatTextOStream &text_os)=0

Include a standard set of the NCBI C++ Toolkit most basic headers.

API (CDeflineGenerator) for computing sequences' titles ("definitions").

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

@ e_Title

a title for this sequence

void AddPeriod(string &str)

void CleanAndCompress(string &dest, const CTempString &instr)

void ConvertQuotes(string &str)

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