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NCBI C++ ToolKit: include/objects/blastdb/defline_extra.hpp File Reference

Blast defline related defines. More...

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struct   SBlastDbMaskData   Structure describing filtered regions created using a particular sequence filtering algorithm. More...
  enum   LinkoutTypes {
  eFromType = (1<<0) , eUnigene = (1<<1) , eStructure = (1<<2) , eGeo = (1<<3) ,
  eGene = (1<<4) , eFromVerifiedMaterial = (1<<5) , eMapviewer = (1<<6) , eGenomicSeq = (1<<7) ,
  eBioAssay = (1<<8) , eReprMicrobialGenomes = (1<<9) , eGenomeDataViewer = (1<<10) , eTranscript = (1<<11)
}   Linkout bit definitions. More...
 

Blast defline related defines.

Definition in file defline_extra.hpp.

◆ kAsnDeflineObjLabel #define kAsnDeflineObjLabel   "ASN1_BlastDefLine"

Definition at line 41 of file defline_extra.hpp.

◆ kTaxDataObjLabel ◆ TLinkoutTypeString

Defines a pair of LinkoutTypes and its string representation.

Definition at line 63 of file defline_extra.hpp.

◆ LinkoutTypes

Linkout bit definitions.

Enumerator eFromType 

Identifies sequences from type (Entrez query: sequence from type[filter])

eUnigene 

Add Linkout for UniGene.

eStructure 

Add Linkout for structure.

eGeo 

Add Linkout for Geo.

eGene 

Add Linkout for Gene.

eFromVerifiedMaterial 

Identifies sequences from verified material (Entrez query: 177353[BioProject])

eMapviewer 

The main blast link goes to entrez but we put on a linkout icon that goes to mapviewer.

eGenomicSeq 

Is a genomic sequence.

Used for the genome+transcript database to show the genomic and transcript sequences separately.

eBioAssay 

Add Linkout for BioAssay (structure group resource)

eReprMicrobialGenomes 

Linkout for the representative microbial genomes.

eGenomeDataViewer 

Linkout for Genome Data Viewer (GDV)

eTranscript 

Linkout for transcript sequences only (GDV)

Definition at line 45 of file defline_extra.hpp.

◆ GetLinkoutTypes()

Return the available linkout types in a human readable format.

Parameters
return_value a list of available linkouts and their string representation

Definition at line 239 of file Blast_def_line_set.cpp.

References eBioAssay, eFromType, eFromVerifiedMaterial, eGene, eGenomeDataViewer, eGenomicSeq, eGeo, eMapviewer, eReprMicrobialGenomes, eStructure, eTranscript, and eUnigene.

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