Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuSimpleB2SWrapper_8hpp_source.html below:

NCBI C++ ToolKit: include/algo/structure/cd_utils/cuSimpleB2SWrapper.hpp Source File

->GetRegisteredNames(loader_names);

cout <<

<<

<<

<< *itr << endl;

->RevokeDataLoader(*itr);

(

percIdThold = DO_NOT_USE_PERC_ID_THRESHOLD,

matrixName = SCORING_MATRIX_DEFAULT);

(

& seq,

from = 0,

to = 0) { SetSeq(seq,

, from, to);}

(

& seq,

from = 0,

to = 0) { SetSeq(seq,

, from, to);}

SetPercIdThreshold(

percIdThold);

SetHitlistSize(

hitlistSize);

SetEffSearchSpace(

effSearchSpace);

SetEValueThreshold(

eValueThold);

SetMatrixName(

matrixName);

vector<CRef<CSeq_align> >&

()

{

m_alignments;}

()

{

m_alignments.size();}

getPairwiseBlastAlignment(

hitIndex,

& seqAlign)

;

getPairwiseScore(

hitIndex)

;

getPairwiseEValue(

hitIndex)

;

getPairwisePercIdent(

hitIndex)

;

InitializeToDefaults();

SetSeq(

& seq,

isSeq1,

from,

to);

processBlastHits(ncbi::blast::CSearchResults&);

CRef< CBlastAdvancedProteinOptionsHandle > & GetOptionsHandle()

ECompoAdjustModes m_caMode

unsigned int getNumHits() const

static const double E_VAL_WHEN_NO_SEQ_ALIGN

static const unsigned int HITLIST_SIZE_DEFAULT

static const double DO_NOT_USE_PERC_ID_THRESHOLD

CRef< CBlastAdvancedProteinOptionsHandle > m_options

static const unsigned int MAX_HITLIST_SIZE

static const Int8 CDD_DATABASE_SIZE

vector< double > m_percIdents

vector< double > m_scores

const vector< CRef< CSeq_align > > & getAllHits() const

void SetSeq1(CRef< CBioseq > &seq, unsigned int from=0, unsigned int to=0)

static void RemoveAllDataLoaders()

static const Int8 DO_NOT_USE_EFF_SEARCH_SPACE

static const double E_VAL_DEFAULT

vector< CRef< CSeq_align > > m_alignments

static const ECompoAdjustModes COMPOSITION_ADJ_DEF

unsigned int m_hitlistSize

static const string SCORING_MATRIX_DEFAULT

static const double SCORE_WHEN_NO_SEQ_ALIGN

void SetSeq2(CRef< CBioseq > &seq, unsigned int from=0, unsigned int to=0)

ECompoAdjustModes

An collection of constants that specify all permissible modes of composition adjustment.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

vector< string > TRegisteredNames

int64_t Int8

8-byte (64-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_CDUTILS_EXPORT

Declares CPsiBl2Seq, the C++ API for the PSI-BLAST 2 Sequences engine.

CRef< objects::CObjectManager > om

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4