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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuSequenceTable_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/structure/cd_utils/cuSequenceTable.cpp Source File

50  for

(

unsigned int i

= 0;

i

< bioseqVec.size();

i

++)

57  for

(

unsigned int i

= 0;

i

< bioseqVec.size();

i

++)

59

list< CRef< CSeq_id > >& seqIds = bioseqVec[

i

]->SetId();

60  for

(list<

CRef< CSeq_id >

>::iterator it= seqIds.begin(); it != seqIds.end(); it++)

62  for

(

unsigned int

j = 0; j < bioseqVec.size(); j++)

71

list< CRef< CSeq_id > >& seqIds = bioseq->

SetId

();

72  for

(list<

CRef< CSeq_id >

>::iterator it= seqIds.begin(); it != seqIds.end(); it++)

80  if

(seqEntry.

IsSet

())

83

list< CRef< CSeq_entry > >::iterator it = seqSet.begin();

84  for

(; it != seqSet.end(); it++)

102

pair<SeqidToBioseqMap::const_iterator, SeqidToBioseqMap::const_iterator> range =

m_table

.

equal_range

(seqId);

104

bioseqVec.push_back(it->second);

105  return

bioseqVec.size();

110

vector< CRef< CBioseq > > bioseqVec;

113  for

(

unsigned int i

= 0;

i

< bioseqVec.size();

i

++)

116

CBioseq::TId::const_iterator it = ids.begin(), itend = ids.end();

117  for

(; it != itend; ++it)

119  if

((*it)->Match(*seqId))

121

bioseq = bioseqVec[

i

];

135

seqEntry->

SetSeq

(*bioseq);

147

err =

"Cannot open file for writing"

;

153  LOG_POST

(

"Failed to write to "

<<filename<<

" because of "

<<err);

155  LOG_POST

(

"Failed to write to "

<<filename<<

"because of "

<<err);

void addSequence(CRef< CBioseq > bioseq)

bool findSequence(CRef< CSeq_id > seqId, CRef< CBioseq > &bioseq) const

void dump(string filename)

unsigned findSequencesInTheGroup(CRef< CSeq_id > seqId, vector< CRef< CBioseq > > &bioseqVec) const

void addSequences(vector< CRef< CBioseq > > &bioseqVec, bool grouped=false)

const_iterator_pair equal_range(const key_type &key) const

container_type::const_iterator const_iterator

const_iterator end() const

iterator insert(const value_type &val)

const_iterator begin() const

container_type::iterator iterator

container_type::value_type value_type

static bool WriteASNToStream(ncbi::CNcbiOstream &os, const ASNClass &ASNobject, bool isBinary, std::string *err, ncbi::EFixNonPrint fixNonPrint=ncbi::eFNP_Default)

std::ofstream out("events_result.xml")

main entry point for tests

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

TSet & SetSet(void)

Select the variant.

bool IsSet(void) const

Check if variant Set is selected.

TSeq & SetSeq(void)

Select the variant.

TSeq_set & SetSeq_set(void)

Assign a value to Seq_set data member.

TId & SetId(void)

Assign a value to Id data member.

list< CRef< CSeq_id > > TId

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