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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuSeqtree_8hpp_source.html below:

NCBI C++ ToolKit: include/algo/structure/cd_utils/cuSeqtree.hpp Source File

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32 #if !defined(CU_SEQTREE_HPP) 33 #define CU_SEQTREE_HPP 57  SeqItem

(

int

rowid,

double

dist=0.0);

60  void

select(

bool

on=

true

);

61  void

select(

CCdCore

* cd,

bool

on=

true

);

62  int

getAllInstances();

63  int

getAllSelectedInstances();

106  double

getMaxDistanceToRoot();

110  void

getOrdersInTree(vector<int>& positions);

111  void

getDiversityRankToRow(

int

colRow, list<int>& rankList);

117  void

getSelectedSequenceRowid(

const iterator

& node, vector<int>& selections);

118  void

getSequenceRowid(

const iterator

& node, vector<int>& selections);

119  void

clearInternalNodeSelection();

120  void

selectByRowID(

const set<int>

& receivedSelection,

bool

select=

true

,

CCdCore

* cd=0);

121  void

selectByTax(

const

vector<int>& rows,

long

taxid);

123  void

selectNode(

const iterator

& node,

bool

select=

true

,

CCdCore

* cd=0);

125  void

getDistantNodes(

double

dist, vector<SeqTreeIterator>& nodes);

127  void

uncollapseAll();

157  void

prepare(

int

& numLeaf,

double

& maxDist,

const iterator

& cursor);

158  void

prepareCollapsedNodes(

int

& numLeaf);

159  void

clearTaxSelection();

160  void

getDistantNodes(

const iterator

& start,

double

dist, vector<SeqTreeIterator>& nodes);

161  void

getDiversityRankUnderNode(

SeqTreeIterator

node, list<int>& rankList);

CConstRef< CSeq_id > seqId

queue< iterator > IteQueue

IteQueue m_collapsedNodes

map< int, iterator > RowLeafMap

std::string m_longestName

SeqTreeBase::iterator SeqTreeIterator

tree< SeqItem > SeqTreeBase

map< int, string > RowMembershipColor

map< int, std::string > IntToStringMap

bool operator==(const CEquivRange &A, const CEquivRange &B)

CNcbiOstream & operator<<(CNcbiOstream &out, const CEquivRange &range)

static void DLIST_NAME() init(DLIST_LIST_TYPE *list)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_CDUTILS_EXPORT

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