Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuSeqTreeAsnizer_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/structure/cd_utils/cuSeqTreeAsnizer.cpp Source File

treeOption.cTermExt = alg->GetCTerminalExt();

treeOption.nTermExt = alg->GetNTerminalExt();

treeOption.clusteringMethod = (

)(alg->GetClustering_Method());

alg->GetScoring_Scheme() - 1 : alg->GetScoring_Scheme());

(seqTree.

() == seqTree.

())

(sit != (seqTree.

()).

())

list< CRef< CSeqTree_node > >& childList = asnNode.

().SetChildren();

childList.push_back(nodeRef);

(sit != cursor.

())

asnNode.

(cursor->name);

CSeqTree_node::C_Children::C_Footprint&

= child.

();

seqId.

(*seqIdRef);

.SetRowId(cursor->rowID);

list< CRef< CSeqTree_node > >& children = root.

().SetChildren();

list< CRef< CSeqTree_node > >::iterator lcit = children.begin();

(; lcit != children.end(); lcit++)

list< CRef< CSeqTree_node > >& children = asnNode.

().SetChildren();

list< CRef< CSeqTree_node > >::iterator lcit = children.begin();

(; lcit != children.end(); lcit++)

(; sit != liMap.

(); sit++)

sit->second.it->rowID =

;

(; sit != liMap.

(); sit++)

= sit->second.it->rowID;

sit->second.asnNode->SetAnnotation().SetPresentInChildCD(cd->

());

(seqTree.

() == seqTree.

())

(sit != (seqTree.

()).

())

list< CRef< CSeqTree_node > >& childList = asnNode.

().SetChildren();

childList.push_back(nodeRef);

(sit != cursor.

())

asnNode.

(cursor->name);

CSeqTree_node::C_Children::C_Footprint&

= child.

();

.SetRowId(cursor->rowID);

CCdCore * GetScopedLeafCD(int row) const

int FindSeqInterval(const CSeq_interval &seqLoc) const

int GetLowerBound(int row) const

int GetUpperBound(int row) const

bool GetSeqIDForRow(int row, CRef< CSeq_id > &SeqID) const

string GetAccession(int &Version) const

CConstRef< CSeq_id > seqId

static bool convertToAsnSeqTree(const AlignmentCollection &ac, const SeqTree &seqTree, CSequence_tree &asnSeqTree)

static bool addChildNode(SeqTree &seqTree, SeqTreeIterator parentNode, CSeqTree_node &asnNode, SeqLocToSeqItemMap &liMap)

static bool convertToSeqTree(CSequence_tree &asnSeqTree, SeqTree &seqTree, SeqLocToSeqItemMap &liMap)

static void fillAsnSeqTreeNode(const AlignmentCollection &ac, const SeqTreeIterator &cursor, CSeqTree_node &asnNode)

static bool addAsnSeqTreeNode(const AlignmentCollection &ac, const SeqTree &seqTree, SeqTreeIterator cursor, CSeqTree_node &asnNode)

static bool convertToAlgType(const TreeOptions &options, CRef< CAlgorithm_type > &alg)

static bool readAlgType(CNcbiIstream &is, CRef< CAlgorithm_type > &alg)

static bool resolveRowId(const AlignmentCollection &ac, SeqLocToSeqItemMap &liMap)

static void fillSeqItem(const CSeqTree_node &node, SeqItem &seqItem)

static bool writeAlgType(CNcbiOstream &os, const CRef< CAlgorithm_type > &alg)

static bool refillAsnMembership(const AlignmentCollection &ac, SeqLocToSeqItemMap &liMap)

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

iterator_bool insert(const value_type &val)

container_type::value_type value_type

sibling_iterator end() const

unsigned int number_of_children() const

sibling_iterator begin() const

iter append_child(iter position)

pre_order_iterator begin() const

iter insert(iter position, const T &x)

pre_order_iterator end() const

static bool ReadASNFromStream(ncbi::CNcbiIstream &is, ASNClass *ASNobject, bool isBinary, std::string *err)

static bool WriteASNToStream(ncbi::CNcbiOstream &os, const ASNClass &ASNobject, bool isBinary, std::string *err, ncbi::EFixNonPrint fixNonPrint=ncbi::eFNP_Default)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Optimized implementation of CSerialObject::Assign, which is not so efficient.

TObjectType & GetObject(void)

Get object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

@ fConvErr_NoThrow

Do not throw an exception on error.

bool CanGetChildren(void) const

Check if it is safe to call GetChildren method.

const TName & GetName(void) const

Get the Name member data.

void SetDistance(TDistance value)

Assign a value to Distance data member.

const TSeqRange & GetSeqRange(void) const

Get the SeqRange member data.

const TChildren & GetChildren(void) const

Get the Children member data.

TFootprint & SetFootprint(void)

Select the variant.

void SetClustering_Method(TClustering_Method value)

Assign a value to Clustering_Method data member.

const TPresentInChildCD & GetPresentInChildCD(void) const

Get the PresentInChildCD member data.

void SetChildren(TChildren &value)

Assign a value to Children data member.

void SetScoring_Scheme(TScoring_Scheme value)

Assign a value to Scoring_Scheme data member.

bool IsSetRoot(void) const

Check if a value has been assigned to Root data member.

void ResetRoot(void)

Reset Root data member.

void SetTree_scope(TTree_scope value)

Assign a value to Tree_scope data member.

bool IsSetRowId(void) const

Check if a value has been assigned to RowId data member.

void SetCTerminalExt(TCTerminalExt value)

Assign a value to CTerminalExt data member.

void SetName(const TName &value)

Assign a value to Name data member.

void SetScore_Matrix(TScore_Matrix value)

Assign a value to Score_Matrix data member.

void SetRoot(TRoot &value)

Assign a value to Root data member.

const TFootprint & GetFootprint(void) const

Get the variant data.

TDistance GetDistance(void) const

Get the Distance member data.

void SetNTerminalExt(TNTerminalExt value)

Assign a value to NTerminalExt data member.

void SetColoring_scope(TColoring_scope value)

Assign a value to Coloring_scope data member.

bool IsChildren(void) const

Check if variant Children is selected.

void SetAnnotation(TAnnotation &value)

Assign a value to Annotation data member.

TRowId GetRowId(void) const

Get the RowId member data.

bool IsFootprint(void) const

Check if variant Footprint is selected.

bool CanGetAnnotation(void) const

Check if it is safe to call GetAnnotation method.

const TAnnotation & GetAnnotation(void) const

Get the Annotation member data.

@ eScoring_Scheme_aligned_score_ext

@ eColoring_scope_allDescendants

@ eTree_scope_allDescendants

TStr & SetStr(void)

Select the variant.

void SetTo(TTo value)

Assign a value to To data member.

const TId & GetId(void) const

Get the Id member data.

void SetId(TId &value)

Assign a value to Id data member.

void SetFrom(TFrom value)

Assign a value to From data member.

TGi & SetGi(void)

Select the variant.

TLocal & SetLocal(void)

Select the variant.

#define row(bind, expected)

CAlgorithm_type::EColoring_scope coloringScope

ETreeMethod clusteringMethod

CAlgorithm_type::ETree_scope scope

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4