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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuScoringMatrix_8hpp_source.html below:

NCBI C++ ToolKit: include/algo/structure/cd_utils/cuScoringMatrix.hpp Source File

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1 #ifndef CU_SCORING_MATRIX__HPP 2 #define CU_SCORING_MATRIX__HPP 74 #define INVALIDNAME "InvalidMatrix" 78 #define BLOSUM45SIZE 24 79 #define BLOSUM45NAME "BLOSUM45" 83 #define BLOSUM62SIZE 24 84 #define BLOSUM62NAME "BLOSUM62" 88 #define BLOSUM80SIZE 24 89 #define BLOSUM80NAME "BLOSUM80" 94 #define PAM30NAME "PAM30" 99 #define PAM70NAME "PAM70" 107 #define PAM250SIZE 24 108 #define PAM250NAME "PAM250" 117  char

ch =

toupper

((

unsigned char

) original);

119  case 'A'

:

case 'R'

:

case 'N'

:

case 'D'

:

case 'C'

:

120  case 'Q'

:

case 'E'

:

case 'G'

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case 'H'

:

case 'I'

:

121  case 'L'

:

case 'K'

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case 'M'

:

case 'F'

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case 'P'

:

122  case 'S'

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case 'T'

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case 'W'

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case 'Y'

:

case 'V'

:

123  case 'B'

:

case 'Z'

:

SNCBIFullScoreMatrix m_scoreMatrix

EScoreMatrixType GetType() const

int GetScore(char i, char j)

Include a standard set of the NCBI C++ Toolkit most basic headers.

const EScoreMatrixType GLOBAL_DEFAULT_SCORE_MATRIX

string GetScoringMatrixName(EScoreMatrixType type)

char ScreenResidueCharacter(char original)

const int NUMBER_OF_SCORING_MATRIX_TYPES

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_CDUTILS_EXPORT

The NCBI C++/STL use hints.

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