#include <corelib/ncbistd.hpp>
#include <corelib/ncbistl.hpp>
#include <util/tables/raw_scoremat.h>
#include <map>
#include <vector>
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◆ BLOSUM45NAME ◆ BLOSUM45SIZE ◆ BLOSUM62NAME ◆ BLOSUM62SIZE ◆ BLOSUM80NAME ◆ BLOSUM80SIZE ◆ INVALIDNAME ◆ INVALIDSIZE ◆ PAM250NAME ◆ PAM250SIZE ◆ PAM30NAME ◆ PAM30SIZE ◆ PAM70NAME ◆ PAM70SIZE ◆ EScoreMatrixType Enumerator eInvalidMatrixType eBlosum45 eBlosum62 eBlosum80 ePam30 ePam70 ePam250Definition at line 59 of file cuScoringMatrix.hpp.
◆ GetScoringMatrixName()Definition at line 42 of file cuScoringMatrix.cpp.
References BLOSUM45NAME, BLOSUM62NAME, BLOSUM80NAME, eBlosum45, eBlosum62, eBlosum80, eInvalidMatrixType, ePam250, ePam30, ePam70, INVALIDNAME, PAM250NAME, PAM30NAME, and PAM70NAME.
Referenced by ScoreMatrix::initialize(), SeqTreeAPI::layoutSeqTree(), and PssmMaker::makeDefaultPssm().
◆ ScreenResidueCharacter() char ScreenResidueCharacter ( char original ) inline ◆ GLOBAL_DEFAULT_SCORE_MATRIX ◆ NUMBER_OF_SCORING_MATRIX_TYPESRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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