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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuScoringMatrix_8hpp.html below:

NCBI C++ ToolKit: include/algo/structure/cd_utils/cuScoringMatrix.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <corelib/ncbistl.hpp>
#include <util/tables/raw_scoremat.h>
#include <map>
#include <vector>

Go to the source code of this file.

Go to the SVN repository for this file.

◆ BLOSUM45NAME ◆ BLOSUM45SIZE ◆ BLOSUM62NAME ◆ BLOSUM62SIZE ◆ BLOSUM80NAME ◆ BLOSUM80SIZE ◆ INVALIDNAME ◆ INVALIDSIZE ◆ PAM250NAME ◆ PAM250SIZE ◆ PAM30NAME ◆ PAM30SIZE ◆ PAM70NAME ◆ PAM70SIZE ◆ EScoreMatrixType Enumerator eInvalidMatrixType  eBlosum45  eBlosum62  eBlosum80  ePam30  ePam70  ePam250 

Definition at line 59 of file cuScoringMatrix.hpp.

◆ GetScoringMatrixName()

Definition at line 42 of file cuScoringMatrix.cpp.

References BLOSUM45NAME, BLOSUM62NAME, BLOSUM80NAME, eBlosum45, eBlosum62, eBlosum80, eInvalidMatrixType, ePam250, ePam30, ePam70, INVALIDNAME, PAM250NAME, PAM30NAME, and PAM70NAME.

Referenced by ScoreMatrix::initialize(), SeqTreeAPI::layoutSeqTree(), and PssmMaker::makeDefaultPssm().

◆ ScreenResidueCharacter() char ScreenResidueCharacter ( char  original ) inline ◆ GLOBAL_DEFAULT_SCORE_MATRIX ◆ NUMBER_OF_SCORING_MATRIX_TYPES

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