RetroSearch Browse

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuPrefTaxNodes_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/structure/cd_utils/cuPrefTaxNodes.cpp Source File

73 m_loaded

= (nAdded == taxids.size());

86 if

(forceClearAncestorMap || (inputType && !(

m_inputType

& *inputType))) {

101 m_err

"Failed to read preferred Taxonomy nodes from file '"

+ prefTaxnodeFileName +

"'.\n"

;

141 const

list< CRef< CCdd_org_ref > >& orgList = orgRefs.

Get

();

142

list< CRef< CCdd_org_ref > >::const_iterator cit = orgList.begin();

144 for

(; cit != orgList.end(); cit++)

183 unsigned int

nAdded = 0, nTaxa =

static_cast<unsigned int>

(taxids.size());

186 if

(notAddedTaxids) notAddedTaxids->clear();

188 for

(

unsigned int i

= 0;

< nTaxa; ++

) {

192 if

(taxClient.

GetOrgRef

(taxids[

], orgRef)) {

196

cddOrgRefList.push_back(cddOrgRef);

198

}

else if

(notAddedTaxids) {

199

notAddedTaxids->push_back(taxids[

]);

201

}

else if

(notAddedTaxids) {

202

notAddedTaxids->push_back(taxids[

]);

211 unsigned int

taxaIndex = 0, nAdded = 0;

213

CCdd_org_ref_set::Tdata::const_iterator cddOrgRefListCit = cddOrgRefList.begin(), citEnd = cddOrgRefList.end();

215 if

(notAddedIndices) notAddedIndices->clear();

217 for

(; cddOrgRefListCit != citEnd; ++cddOrgRefListCit ) {

218

taxId =

getTaxId

(*cddOrgRefListCit);

220

taxids.push_back(taxId);

222

}

else if

(notAddedIndices) {

223

notAddedIndices->push_back(taxaIndex);

244 if

(taxClient && tit == titEnd) {

278

priorityTaxid = taxidIn;

284

priorityTaxid = it->first;

305

orgNode = &(it->second);

306 return

it->second.

order

;

313

orgNode = &(it->second);

314 return

it->second.

order

;

329 return

orgNode->

order

;

User-defined methods of the data storage class.

bool LoadFromFile(const string &prefTaxnodeFileName, bool doReset=false)

bool ReadPreferredTaxnodes(const string &fileName, bool reset=false)

TaxNodeInputType m_inputType

int GetPriorityTaxnode(TTaxId taxid, string &nodeName, TaxClient *taxClient=NULL)

bool GetPriorityTaxid(TTaxId taxidIn, TTaxId &priorityTaxid, TaxClient &taxClient)

virtual ~CPriorityTaxNodes()

bool IsPriorityTaxnode(TTaxId taxid)

static TTaxId getTaxId(const CRef< CCdd_org_ref > &orgRef)

static string getTaxName(const CRef< CCdd_org_ref > &orgRef)

unsigned int Load(const CCdd_pref_nodes &prefNodes, bool doReset=false)

static unsigned int CddOrgRefSetToTaxIds(const CCdd_org_ref_set &cddOrgRefSet, vector< TTaxId > &taxids, vector< int > *notAddedIndices=NULL)

CPriorityTaxNodes(TaxNodeInputType inputType)

static unsigned int TaxIdsToCddOrgRefSet(const vector< TTaxId > &taxids, CCdd_org_ref_set &cddOrgRefSet, TaxClient &taxClient, vector< TTaxId > *notAddedTaxids=NULL)

void BuildMap(const CCdd_pref_nodes &prefNodes, bool reset=false)

TaxidToOrgMap::iterator findAncestor(TTaxId taxid, TaxClient *taxClient)

void Reset(TaxNodeInputType *inputType=NULL, bool forceClearAncestorMap=false)

static bool isActive(const CRef< CCdd_org_ref > &orgRef)

bool GetPriorityTaxidAndName(TTaxId taxidIn, TTaxId &priorityTaxid, string &nodeName, TaxClient &taxClient)

TAncestorMap m_ancestralTaxNodeMap

static const char * PREF_TAXNODE_FILE

TaxidToOrgMap m_selectedTaxNodesMap

void putIntoMap(const CCdd_org_ref_set &orgRefs)

virtual bool GetOrgRef(TTaxId taxId, COrg_ref &orgRef)

virtual bool IsTaxDescendant(TTaxId tax1, TTaxId tax2)

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

iterator_bool insert(const value_type &val)

container_type::value_type value_type

const_iterator find(const key_type &key) const

static bool ReadASNFromFile(const char *filename, ASNClass *ASNobject, bool isBinary, std::string *err)

SStrictId_Tax::TId TTaxId

Taxon id type.

bool NotEmpty(void) const THROWS_NONE

Check if CRef is not empty â pointing to an object and has a non-null value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

void SetActive(TActive value)

Assign a value to Active data member.

const Tdata & Get(void) const

Get the member data.

const TModel_organisms & GetModel_organisms(void) const

Get the Model_organisms member data.

bool CanGetOptional_nodes(void) const

Check if it is safe to call GetOptional_nodes method.

TActive GetActive(void) const

Get the Active member data.

list< CRef< CCdd_org_ref > > Tdata

void SetReference(TReference &value)

Assign a value to Reference data member.

bool CanGetReference(void) const

Check if it is safe to call GetReference method.

bool CanGetModel_organisms(void) const

Check if it is safe to call GetModel_organisms method.

bool CanGetPreferred_nodes(void) const

Check if it is safe to call GetPreferred_nodes method.

const TPreferred_nodes & GetPreferred_nodes(void) const

Get the Preferred_nodes member data.

Tdata & Set(void)

Assign a value to data member.

const TReference & GetReference(void) const

Get the Reference member data.

const TOptional_nodes & GetOptional_nodes(void) const

Get the Optional_nodes member data.

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

bool IsSetTaxname(void) const

preferred formal name Check if a value has been assigned to Taxname data member.

const CRef< CCdd_org_ref > orgRef

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4