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NCBI C++ ToolKit: src/algo/structure/cd_utils/cuDmBlastscore.cpp Source File

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maxScore, minScore;

vector<double> AllScores;

blaster.

(pFunc);

(j=1; j<nrows; j++) {

(k=0; k<j; k++) {

FudgeFactor = 1.01;

void GetExtremalEntries(double &max, double &min, bool ignoreDiagonal=false)

void LinearTransform(double b, double m, bool ignoreDiagonal=false)

void useWholeSequence(bool whole)

double getPairwiseScore(int row1, int row2)

bool blast(NotifierFunction notifier=0)

void setFootprintExtension(int nExt, int CExt)

void SetUseFullSequence(bool value)

static const double E_VAL_ON_BLAST_FAILURE

virtual bool ComputeMatrix(pProgressFunction pFunc)

bool CalcPairwiseScoresOnTheFly(pProgressFunction pFunc)

void initDMBlastScore(EScoreMatrixType type, int nTermExt, int cTermExt)

static const double SCORE_ON_BLAST_FAILURE

DM_BlastScore(EScoreMatrixType type, int ext)

static const bool USE_FULL_SEQUENCE_DEFAULT

ScoreMatrix * m_scoreMatrix

AlignmentCollection * m_aligns

void(* pProgressFunction)(int Num, int Total)

const int SCORE_NOT_FOUND

const double E_VAL_NOT_FOUND

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

const GenericPointer< typename T::ValueType > T2 value

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