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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuBlockIntersector_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/structure/cd_utils/cuBlockIntersector.cpp Source File

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m_firstBm(0), m_aligned(0)

m_aligned =

[seqLen];

(

= 0;

< seqLen;

++)

std::vector<Block>&

=

.getBlocks();

(

= 0;

<

.size();

++)

(

pos =

[

].getStart(); pos <=

[

].getEnd(); pos++)

std::vector<Block>&

=

.getBlocks();

(

= 0;

<

.size();

++)

(

pos =

[

].getStart(); pos <=

[

].getEnd(); pos++)

inBlock =

;

(rowFraction < 0.0 || rowFraction > 1.0) rowFraction = 1.0;

adjustedTotalRows =

* rowFraction;

std::set<int>::const_iterator setEnd = forcedBreak.end();

inBlock =

;

forceNewBlock =

;

(rowFraction <= 0.0 || rowFraction > 1.0) rowFraction = 1.0;

adjustedTotalRows =

* rowFraction;

forceNewBlock = (

> 0 && forcedBreak.find(

- 1) != setEnd);

(forceNewBlock)

const BlockModel * m_firstBm

void addOneAlignment(const BlockModel &bm)

BlockModel * getIntersectedAlignment(double rowFraction=1.0)

void removeOneAlignment(const BlockModel &bm)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static DP_BlockInfo * blocks

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