Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cuAlign_8hpp_source.html below:

NCBI C++ ToolKit: include/algo/structure/cd_utils/cuAlign.hpp Source File

vector<

>* starts =

, vector<

>* lengths =

);

int MapPositionToMaster(int childPos, const CSeq_align &align)

void MakeDDFromSeqLoc(CSeq_loc *pAl, TDendiag *pDD)

void MakeSeqLocFromDD(const TDendiag *pDD, CSeq_loc *pAl)

TDendiag::const_iterator TDendiag_cit

TGi GetMasterGIFromSeqAlign(const CRef< CSeq_align > &seqAlign, string &err)

int GetLowerBound(const CRef< CSeq_align > &seqAlign, bool onMaster)

CRef< CSeq_align > ExtractFirstSeqAlign(CRef< CSeq_align > seqAlign)

CSeq_align::C_Segs::TDendiag TDendiag

bool CheckSeqIdInDD(const CRef< CSeq_align > &seqAlign)

bool ChangeSeqIdInSeqAlign(CRef< CSeq_align > &sa, const CRef< CSeq_id > &newSeqId, bool onMaster)

int GetAlignedPositions(const CRef< CSeq_align > &align1, const CRef< CSeq_align > &align2, vector< int > &alignedPositions, bool onMaster)

int GetBlockStartsForMaster(const CRef< CSeq_align > &seqAlign, vector< int > &starts)

CRef< CSeq_align > Denseg2DenseDiagList(const CRef< CSeq_align > &denseSegSeqAlign)

int GetBlockCount(const CRef< CSeq_align > &seqAlign)

int MapPosition(const CSeq_align &seqAlign, int Position, CoordMapDir mapDir)

bool IsPositionAligned(const CSeq_align &seqAlign, int Position, bool onMaster)

bool GetDenDiagSet(const CRef< CSeq_annot > &seqAnnot, int row, const TDendiag *&pDenDiagSet)

void SetAlignedResiduesOnSequence(const CRef< CSeq_align > &align, const string &sequenceString, char *&pAlignedRes, bool isMaster=false)

TDendiag::iterator TDendiag_it

int GetBlockNumberForResidue(int residue, const CRef< CSeq_align > &seqAlign, bool onMaster, vector< int > *starts=NULL, vector< int > *lengths=NULL)

void AddIntervalToDD(TDendiag *pDD, CRef< CSeq_id > seqID1, CRef< CSeq_id > seqID2, TSeqPos st1, TSeqPos st2, TSeqPos lll)

bool GetFirstOrLastDenDiag(const CRef< CSeq_align > &seqAlign, bool firstOrLast, CRef< CDense_diag > &dd)

bool EraseRow(CRef< CSeq_annot > &seqAnnot, int row)

int GetBlockLengths(const CRef< CSeq_align > &seqAlign, vector< int > &lengths)

bool GetSeqID(const CRef< CSeq_align > &seqAlign, CRef< CSeq_id > &SeqID, bool getSlave=true)

bool GetPendingSeqId(CCdCore *pCD, int irow, CRef< CSeq_id > &seqID)

int MapPositionToChild(int masterPos, const CSeq_align &align)

int GetBlockStarts(const CRef< CSeq_align > &seqAlign, vector< int > &starts, bool onMaster)

int GetUpperBound(const CRef< CSeq_align > &seqAlign, bool onMaster)

bool SetDenDiagSet(CRef< CSeq_annot > &seqAnnot, int row, TDendiag *&pddSet)

int GetPssmIdFromSeqAlign(const CRef< CSeq_align > &seqAlign, string &err)

bool GetDDSetFromSeqAlign(const CSeq_align &align, const TDendiag *&dd)

int GetNumAlignedResidues(const CRef< CSeq_align > &align)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_CDUTILS_EXPORT

Defines command line argument related classes.

#define row(bind, expected)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4