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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/ct__nlmzip__inflate_8cpp_source.html below:

NCBI C++ ToolKit: src/ctools/ctransition/ct_nlmzip_inflate.cpp Source File

123 #define flush_output(w) (Nlmzip_outcnt=(w),Nlmzip_flush_window()) 164

16, 17, 18, 0, 8, 7, 9, 6,

165

10, 5, 11, 4, 12, 3, 13, 2,

170

3, 4, 5, 6, 7, 8, 9, 10,

171

11, 13, 15, 17, 19, 23, 27, 31,

172

35, 43, 51, 59, 67, 83, 99, 115,

173

131, 163, 195, 227, 258, 0, 0

178

0, 0, 0, 0, 0, 0, 0, 0,

179

1, 1, 1, 1, 2, 2, 2, 2,

180

3, 3, 3, 3, 4, 4, 4, 4,

181

5, 5, 5, 5, 0, 99, 99

185

1, 2, 3, 4, 5, 7, 9, 13, 17, 25, 33, 49, 65, 97, 129, 193,

186

257, 385, 513, 769, 1025, 1537, 2049, 3073, 4097, 6145,

187

8193, 12289, 16385, 24577

190

0, 0, 0, 0, 1, 1, 2, 2, 3, 3, 4, 4, 5, 5, 6, 6,

191

7, 7, 8, 8, 9, 9, 10, 10, 11, 11,

228

0x0001, 0x0003, 0x0007, 0x000f, 0x001f, 0x003f, 0x007f, 0x00ff,

229

0x01ff, 0x03ff, 0x07ff, 0x0fff, 0x1fff, 0x3fff, 0x7fff, 0xffff

232 #define NEEDBITS(n) { \ 233  while ( k < (n) ) { \ 234  b |= ((ulg)Nlmzip_ReadByte()) << k; \ 238 #define DUMPBITS(n) { \ 325

memset(c, 0,

sizeof

(c));

340  for

( j = 1; j <=

BMAX

; j++ ) {

360  for

(y = 1 << j; j <

i

; j++, y <<= 1)

363  if

((y -= c[

i

]) < 0)

370

p = c + 1; xp = x + 2;

407

z = (z =

g

- w) > (

Uint4

)

l

?

l

: z;

408  if

((

f

= 1 << (j = k - w)) >

a

+ 1)

414  if

((

f

<<= 1) <= *++xp)

422  if

((q = (

struct huft

*)

malloc

((z + 1)*

sizeof

(

struct huft

))) ==

439  r

.e = (

uch

)(16 + j);

447  r

.b = (

uch

)(k - w);

452  r

.e = (

uch

)(*p < 256 ? 16 : 15);

453  r

.v.n = (

ush

)(*p);

458  r

.e = (

uch

)

e

[*p - s];

459  r

.v.n = d[*p++ - s];

464  for

(j =

i

>> w; j < z; j +=

f

)

468  for

(j = 1 << (k - 1);

i

& j; j >>= 1)

473  while

((

i

& ((1 << w) - 1)) != x[h])

482  return

y != 0 &&

g

!= 1;

502  while

( p !=

NULL

) {

543  if

( (

e

= (

t

= tl + ((

Uint4

)

b

& ml))->

e

) > 16 ) {

575  if

( (

e

= (

t

=

td

+ ((

Uint4

)

b

& md))->

e

) > 16 ) {

656  if

(

n

!= (

Uint4

)((~

b

) & 0xffff) ) {

701  for

(

i

= 0;

i

< 144;

i

++ ) {

704  for

(;

i

< 256;

i

++) {

707  for

(;

i

< 280;

i

++) {

710  for

(;

i

< 288;

i

++) {

720  for

(

i

= 0;

i

< 30;

i

++ ) {

772

nl = 257 + ((

Uint4

)

b

& 0x1f);

776

nd = 1 + ((

Uint4

)

b

& 0x1f);

780

nb = 4 + ((

Uint4

)

b

& 0xf);

783  if

( nl > 286 || nd > 30 ) {

789  for

(j = 0; j < nb; j++) {

794  for

(; j < 19; j++ ) {

818

}

else if

(j == 16) {

820

j = 3 + ((

Uint4

)

b

& 3);

828

}

else if

(j == 17) {

830

j = 3 + ((

Uint4

)

b

& 7);

841

j = 11 + ((

Uint4

)

b

& 0x7f);

void Nlmzip_ReadUndo(void)

unsigned char Nlmzip_window[2L *0x8000]

static int inflate_codes(struct huft *, struct huft *, int, int)

static unsigned short mask_bits[]

static int inflate_dynamic(void)

static int inflate_fixed(void)

static unsigned short cplens[]

static int huft_free(struct huft *)

static int huft_build(Uint4 *, Uint4, Uint4, ush *, ush *, struct huft **, int *)

static int inflate_block(int *)

static int inflate_stored(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

unsigned int

A callback function used to compare two keys in a database.

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n td

if(yy_accept[yy_current_state])

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

int g(Seg_Gsm *spe, Seq_Mtf *psm, Thd_Gsm *tdg)

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