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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/ct__nlmzip__deflate_8cpp_source.html below:

NCBI C++ ToolKit: src/ctools/ctransition/ct_nlmzip_deflate.cpp Source File

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71 #if (WSIZE<<1) > (1<<BITS) 72 # error: cannot overlay Nlmzip_window with tab_suffix and Nlmzip_prev with tab_prefix0 74 #if HASH_BITS > BITS-1 75 # error: cannot overlay head with tab_prefix1 79 #define HASH_SIZE (Uint4)(1<<HASH_BITS) 80 #define HASH_MASK (HASH_SIZE-1) 81 #define WMASK (WSIZE-1) 99 #define H_SHIFT ((HASH_BITS+MIN_MATCH-1)/MIN_MATCH) 106 #define max_insert_length max_lazy_match 116 #define UPDATE_HASH(h,c) (h = (((h)<<H_SHIFT) ^ (c)) & HASH_MASK) 126 #define INSERT_STRING(s, match_head) \ 127  (UPDATE_HASH(ins_h, Nlmzip_window[(s) + MIN_MATCH-1]), \ 128  Nlmzip_prev[(s) & WMASK] = match_head = head[ins_h], \ 135 #define FLUSH_BLOCK(eof) \ 136  Nlmzip_flush_block(Nlmzip_block_start >= 0L \ 137  ? (char*)&Nlmzip_window[(Uint4)Nlmzip_block_start] \ 138  : (char*)NULL,(Int4)Nlmzip_strstart-Nlmzip_block_start,(eof)) 148 typedef unsigned short Pos

;

218 

{32, 128, 258, 1024},

258  uch

scan_end1 = scan[best_len-1];

259  uch

scan_end = scan[best_len];

278  if

(

match

[best_len] != scan_end ||

279  match

[best_len-1] != scan_end1 ||

281

*++

match

!= scan[1])

continue

;

299

&& *++scan == *++

match

&& *++scan == *++

match 300

&& *++scan == *++

match

&& *++scan == *++

match 301

&& *++scan == *++

match

&& *++scan == *++

match 308  if

(

len

> best_len ) {

314

scan_end1 = scan[best_len-1];

315

scan_end = scan[best_len];

318

&& --chain_length != 0 );

349  if

( more == (

Uint4

)~0 ) {

403  Uint4

match_length = 0;

451

}

while

( --match_length != 0 );

500  if

( pack_level < 1 || pack_level > 9 ) {

501  URCOMPRERR

(

"Invalid compression Nlmzip_level"

);

516  if

( pack_level == 1 ) {

518

}

else if

( pack_level == 9 ) {

566  int

match_available = 0;

585  if

( hash_head !=

NIL 644

}

else if

( match_available ) {

674  if

( match_available ) {

unsigned short Nlmzip_prev[1L<< 16]

unsigned char Nlmzip_window[2L *0x8000]

int Nlmzip_ReadData(unsigned char *pData, int iSize)

static ulg deflate_fast(void)

#define max_insert_length

static config configuration_table[10]

#define INSERT_STRING(s, match_head)

static int longest_match(IPos cur_match)

#define UPDATE_HASH(h, c)

static Uint4 max_chain_length

static Uint4 max_lazy_match

void Nlmzip_lm_init(int pack_level, ush *flags)

static void fill_window(void)

int Nlmzip_ct_tally(int, int)

int32_t Int4

4-byte (32-bit) signed integer

uint32_t Uint4

4-byte (32-bit) unsigned integer

unsigned int

A callback function used to compare two keys in a database.

static int match(PCRE2_SPTR start_eptr, PCRE2_SPTR start_ecode, uint16_t top_bracket, PCRE2_SIZE frame_size, pcre2_match_data *match_data, match_block *mb)

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