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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/criteria_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/blast/seqdb_writer/impl/criteria.hpp Source File

1 #ifndef OBJTOOLS_BLAST_SEQDB_WRITER_IMPL___CRITERIA__HPP 2 #define OBJTOOLS_BLAST_SEQDB_WRITER_IMPL___CRITERIA__HPP 143 return

(ptr->

taxid

== 9606);

169 const int

taxid = ptr->

taxid

;

208

this->crit_EST_HUMAN.

(ptr)

209

|| this->crit_EST_MOUSE.

(ptr)

215 return "est_others"

;

236 return

(ptr->

owner

== 6);

262 return

(ptr->

owner

== 10);

294 const size_t

kMinAccessionLength = 9;

296 const string

& accession = ptr->

acc

;

298

(accession.length() >= kMinAccessionLength)

301

&& (accession[2] ==

'_'

)

336 const int

Seq_mol_rna = 2;

337 return

(this->crit_REFSEQ.

(ptr) && (ptr->

mol

== Seq_mol_rna));

342 return "refseq_rna"

;

368

this->crit_REFSEQ.

(ptr)

369

&& ! this->crit_REFSEQ_RNA.is(ptr)

375 return "refseq_genomic"

;

455 unsigned int

GetCriteriaCount(

void

)

const

;

485

objects::CBlast_def_line& defline

User-defined methods of the data storage class.

TCriteriaMap m_Crit_from_Label

Actual container is a map object rather than a set, with the label used as the key.

virtual const char * GetLabel(void) const

@inheritDoc

virtual bool is(const SDIRecord *ptr) const

@inheritDoc

virtual const int GetMembershipBit(void) const

@inheritDoc

virtual const char * GetLabel(void) const

@inheritDoc

virtual const int GetMembershipBit(void) const

@inheritDoc

virtual bool is(const SDIRecord *ptr) const

@inheritDoc

virtual const char * GetLabel(void) const

@inheritDoc

CCriteria_EST_MOUSE crit_EST_MOUSE

virtual bool is(const SDIRecord *ptr) const

@inheritDoc

CCriteria_EST_HUMAN crit_EST_HUMAN

virtual const int GetMembershipBit(void) const

@inheritDoc

virtual bool is(const SDIRecord *ptr) const

@inheritDoc

virtual const int GetMembershipBit(void) const

@inheritDoc

virtual const char * GetLabel(void) const

@inheritDoc

CCriteria_REFSEQ_GENOMIC.

CCriteria_REFSEQ_RNA crit_REFSEQ_RNA

CCriteria_REFSEQ crit_REFSEQ

virtual bool is(const SDIRecord *ptr) const

@inheritDoc

virtual const int GetMembershipBit(void) const

@inheritDoc

virtual const char * GetLabel(void) const

@inheritDoc

virtual const int GetMembershipBit(void) const

@inheritDoc

CCriteria_REFSEQ crit_REFSEQ

virtual bool is(const SDIRecord *ptr) const

@inheritDoc

virtual const char * GetLabel(void) const

@inheritDoc

virtual const int GetMembershipBit(void) const

@inheritDoc

virtual bool is(const SDIRecord *ptr) const

@inheritDoc

virtual const char * GetLabel(void) const

@inheritDoc

virtual bool is(const SDIRecord *ptr) const

@inheritDoc

virtual const char * GetLabel(void) const

@inheritDoc

virtual const int GetMembershipBit(void) const

@inheritDoc

EMembershipBit

Fixed assignment of membership bits.

virtual bool is(const SDIRecord *ptr) const =0

Return true if criteria are met.

virtual const char * GetLabel(void) const =0

Return assigned label.

virtual ~ICriteria()

Virtual destructor.

virtual const int GetMembershipBit(void) const =0

Return assigned membership bit > 0.

The NCBI C++ standard methods for dealing with std::string.

map< string, ICriteria *, ncbi::PNocase > TCriteriaMap

objects::CBlast_def_line::TMemberships CCriteriaSet_CalculateMemberships(const SDIRecord &direcord)

CCriteriaSet_CalculateMemberships.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_XOBJWRITE_EXPORT

static const char label[]

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

Structure which corresponds to format of records in DI files.

int sat_key

Hash value for sequence data.

int hash

Length of sequence.

SDIRecord()

Molecule type, as in Seq-inst::mol.

int len

3-letter division

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