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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/country__fixup_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/country_fixup.cpp Source File

title =

;

title =

;

(dlg.ShowModal() == wxID_OK)

new_feat->

(feat_it->GetOriginalFeature());

((*it)->IsSource()) {

new_desc->

(orig_desc);

modified =

;

((*subsource)->IsSetSubtype() &&

(*subsource)->IsSetName() &&

country = (*subsource)->GetName();

(!new_country.empty() && new_country != country)

(*subsource)->SetName(new_country);

wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

: m_invalid_countries(invalid_countries)

(parent,

, caption, pos,

, style);

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

wxDialog::Create( parent,

, caption, pos,

, style );

GetSizer()->SetSizeHints(

);

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemDialog1->SetSizer(itemBoxSizer2);

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxArrayString itemChoiceStrings, itemChoiceStringsWritable;

itemBoxSizer3->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

->SetTable(gridAdapter,

);

->AutoSizeColumns();

l_height =

->GetColLabelSize();

->SetColLabelSize( 2 * l_height );

((*it)->IsSetHeader() && (*it)->GetHeader().IsSetTitle() )

title = (*it)->GetHeader().GetTitle();

itemChoiceStrings.Add(wxString(title));

itemChoiceStringsWritable.Add(wxString(title));

(glyph_col >= 0 && glyph_col+1 <

->GetNumberCols())

wxBoxSizer* itemBoxSizer4 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer4, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer5 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer5, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer13 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer13, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxButton* itemButton14 =

wxButton( itemDialog1, wxID_OK,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer13->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton15 =

wxButton( itemDialog1, wxID_CANCEL,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer13->Add(itemButton15, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

expand_col->

().SetTitle(

);

expand_col->

().SetField_name(

);

expand_col->

().SetString();

country_col->

().SetTitle(

);

country_col->

().SetField_name(

);

country_col->

().SetString();

accession_col->

().SetTitle(

);

accession_col->

().SetField_name(

);

accession_col->

().SetString();

bogus_col->

().SetField_name(

);

bogus_col->

().SetString();

->SetColumns().push_back(id_col);

->SetColumns().push_back(expand_col);

->SetColumns().push_back(country_col);

->SetColumns().push_back(accession_col);

->SetColumns().push_back(bogus_col);

country = it->first;

accession = it->second;

id_col->

().SetId().push_back(

);

expand_col->

().SetString().push_back(

);

country_col->

().SetString().push_back(country);

accession_col->

().SetString().push_back(accession);

bogus_col->

().SetString().push_back(

);

country = it->first;

accession = it->second;

(row < values_table->GetColumn(

).GetData().GetString().

())

(new_country != country && !new_country.empty())

[country] = new_country;

fixed_countries;

;

wxMessageDialog dlg(

,

(

),

(

),wxOK|wxCANCEL|wxCENTRE);

(dlg.ShowModal() == wxID_OK)

~CBulkCountryEdit()

Destructor.

bool Create(wxWindow *parent, wxWindowID id=wxID_ANY, const wxString &caption=_("Country Modifiers That Could Not Be Autocorrected"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

CBulkCountryEdit()

Constructors.

void Init()

Initialises member variables.

static bool ShowToolTips()

Should we show tooltips?

void OnClickCancel(wxCommandEvent &event)

void CreateControls()

Creates the controls and sizers.

map< string, string > GetValuesFromValuesTable(CRef< objects::CSeq_table >)

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

bool IsReadOnlyColumn(string column_name)

CSeqTableGridPanel * m_GridPanel

CApplyEditconvertPanel * m_AecrPanel

CStringConstraintSelect * m_StringConstraintPanel

vector< pair< string, string > > m_invalid_countries

CRef< objects::CSeq_table > GetChoices(CRef< objects::CSeq_table > values_table)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

CRef< objects::CSeq_table > GetValuesTable()

map< string, string > GetValues()

void AddCommand(IEditCommand &command)

static bool IsValid(const string &country)

static string CountryFixupItem(const string &input, bool capitalize_after_colon)

bool m_capitalize_after_colon

void x_ApplyToDescriptors(const objects::CSeq_entry &se, CCmdComposite *composite)

map< string, string > m_fixed_countries

void x_ApplyToSeqAndFeat(CCmdComposite *composite)

vector< pair< string, string > > m_invalid_countries

bool x_ApplyToBioSource(objects::CBioSource &biosource)

objects::CSeq_entry_Handle m_Seh

CRef< CCmdComposite > GetCommand(objects::CSeq_entry_Handle tse, bool capitalize_after_colon)

Seq-loc and seq-align mapper exceptions.

void MakeColumnReadOnly(int pos, bool val=true)

void InitColumnCollapse(int col)

CRef< objects::CSeq_table > GetValuesTable()

namespace ncbi::objects::

const CSeqTable_column & GetColumn(CTempString column_name) const

const_iterator end() const

const_iterator find(const key_type &key) const

static string s_GetAccession(CBioseq_Handle bsh)

const char * kSequenceIdColLabel

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

CConstRef< CSeq_id > GetSeqId(void) const

@ eContent

Untagged human-readable accession or the like.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

CSeq_entry_Handle GetSeq_entryHandle(CDataLoader *loader, const TBlobId &blob_id, EMissing action=eMissing_Default)

Get Seq-entry handle by its blob-id, with possible loading.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const TColumns & GetColumns(void) const

Get the Columns member data.

void SetHeader(THeader &value)

Assign a value to Header data member.

vector< CRef< CSeqTable_column > > TColumns

void SetData(TData &value)

Assign a value to Data data member.

const TString & GetString(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

@ eField_id_location_id

location Seq-id

void SetData(TData &value)

Assign a value to Data data member.

const TSeq & GetSeq(void) const

Get the variant data.

const TSet & GetSet(void) const

Get the variant data.

bool IsSeq(void) const

Check if variant Seq is selected.

bool IsSet(void) const

Check if variant Set is selected.

TSource & SetSource(void)

Select the variant.

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

const string version

version string

const struct ncbi::grid::netcache::search::fields::SIZE size

#define EDIT_EACH_SUBSOURCE_ON_BIOSOURCE(Itr, Var)

#define FOR_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

FOR_EACH_SEQENTRY_ON_SEQSET EDIT_EACH_SEQENTRY_ON_SEQSET.

#define FOR_EACH_SEQDESC_ON_SEQENTRY(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQENTRY EDIT_EACH_SEQDESC_ON_SEQENTRY.

#define row(bind, expected)

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