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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/country__conflict_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/country_conflict.cpp Source File

42 #include <wx/msgdlg.h> 68

wxWindowID

id

,

const

wxString& caption,

const

wxPoint& pos,

const

wxSize&

size

,

long

style ) : m_TopSeqEntry(seh)

71  for

( ; b_iter ; ++b_iter )

75  if

(!

m_Found

&& b_iter->GetSeq_entry_Handle().HasParentEntry())

80  Create

(parent,

id

, caption, pos,

size

, style);

85

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

86

wxDialog::Create( parent,

id

, caption, pos,

size

, style );

91

GetSizer()->SetSizeHints(

this

);

116

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

117

itemDialog1->SetSizer(itemBoxSizer2);

119

wxBoxSizer* itemBoxSizer3 =

new

wxBoxSizer(wxHORIZONTAL);

120

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

122

wxArrayString itemChoiceStrings, itemChoiceStringsWritable;

126

wxMessageBox(

wxT

(

"No LatLon records found"

),

wxT

(

"Error"

), wxOK | wxICON_ERROR);

133

wxMessageBox(

wxT

(

"No LatLon records found or all records correctly formatted"

),

wxT

(

"Error"

), wxOK | wxICON_ERROR);

139

itemBoxSizer3->Add(

m_GridPanel

, 0, wxALIGN_TOP|wxALL, 5);

142  m_Grid

->SetTable(gridAdapter,

true

);

143  m_Grid

->AutoSizeColumns();

144  int

l_height =

m_Grid

->GetColLabelSize();

145  m_Grid

->SetColLabelSize( 2 * l_height );

152  if

((*it)->IsSetHeader() && (*it)->GetHeader().IsSetTitle() )

154  string

title = (*it)->GetHeader().GetTitle();

157

itemChoiceStrings.Add(wxString(title));

159

itemChoiceStringsWritable.Add(wxString(title));

168  if

(glyph_col >= 0 && glyph_col+1 <

m_Grid

->GetNumberCols())

174

wxBoxSizer* itemBoxSizer4 =

new

wxBoxSizer(wxHORIZONTAL);

175

itemBoxSizer2->Add(itemBoxSizer4, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

180

wxBoxSizer* itemBoxSizer13 =

new

wxBoxSizer(wxHORIZONTAL);

181

itemBoxSizer2->Add(itemBoxSizer13, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

183

wxButton* itemButton14 =

new

wxButton( itemDialog1, wxID_OK,

_

(

"Accept"

), wxDefaultPosition, wxDefaultSize, 0 );

184

itemBoxSizer13->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

186

wxButton* itemButton15 =

new

wxButton( itemDialog1, wxID_CANCEL,

_

(

"Cancel"

), wxDefaultPosition, wxDefaultSize, 0 );

187

itemBoxSizer13->Add(itemButton15, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

198

expand_col->

SetHeader

().SetTitle(

""

);

199

expand_col->

SetHeader

().SetField_name(

"expand"

);

200

expand_col->

SetData

().SetString();

203

current_col->

SetHeader

().SetTitle(

"Lat-Lon"

);

204

current_col->

SetHeader

().SetField_name(

"current"

);

205

current_col->

SetData

().SetString();

208

country_col->

SetHeader

().SetTitle(

"Country"

);

209

country_col->

SetHeader

().SetField_name(

"country"

);

210

country_col->

SetData

().SetString();

213

suggested_col->

SetHeader

().SetTitle(

"Suggested Correction"

);

214

suggested_col->

SetHeader

().SetField_name(

"suggested"

);

215

suggested_col->

SetData

().SetString();

221

bogus_col->

SetHeader

().SetField_name(

""

);

222

bogus_col->

SetData

().SetString();

225  table

->SetColumns().push_back(id_col);

226  table

->SetColumns().push_back(expand_col);

227  table

->SetColumns().push_back(current_col);

228  table

->SetColumns().push_back(country_col);

229  table

->SetColumns().push_back(suggested_col);

230  table

->SetColumns().push_back(bogus_col);

234  for

( vector<string>::iterator fi =

m_LatLon

.begin(); fi !=

m_LatLon

.end() ; ++fi )

244

id_col->

SetData

().SetId().push_back(

id

);

245

expand_col->

SetData

().SetString().push_back(

""

);

246

current_col->

SetData

().SetString().push_back(*fi);

247

country_col->

SetData

().SetString().push_back(country);

248

suggested_col->

SetData

().SetString().push_back(

msg

);

249

bogus_col->

SetData

().SetString().push_back(

""

);

262  bool

select_all =

false

;

265  if

(wxMessageBox(

ToWxString

(

"Apply to all?"

),

wxT

(

"Nothing is selected"

), wxOK | wxCANCEL,

NULL

) == wxOK)

273  for

(

size_t row

= 0;

row

< values_table->

GetColumn

(

"current"

).GetData().GetString().

size

(); ++

row

)

279  if

((old_latlon != new_latlon || old_country != new_country)

280

&& (

m_Grid

->IsInSelection(

static_cast<int>

(

row

),0) || select_all))

281  m_LatLonCountry

[make_pair(old_latlon, old_country)] = make_pair(new_latlon, new_country);

286  for

( ; b_iter ; ++b_iter )

306  return "Invalid operation in Country Conflict Tool"

;

366

wxMessageDialog dlg(

this

,

_

(

"Discard modifications?"

),

_

(

"Attention"

),wxOK|wxCANCEL|wxCENTRE);

367  if

(dlg.ShowModal() == wxID_OK)

381  if

((*subsource)->IsSetSubtype() &&

383

&& (*subsource)->IsSetName())

385

latlon = (*subsource)->GetName();

393  if

((*subsource)->IsSetSubtype() &&

395

&& (*subsource)->IsSetName())

397

country = (*subsource)->GetName();

401  if

(!latlon.empty() && !country.empty())

411  bool

modified =

false

;

416  if

((*subsource)->IsSetSubtype() &&

418

(*subsource)->IsSetName())

420

latlon = (*subsource)->GetName();

428  if

((*subsource)->IsSetSubtype() &&

430

(*subsource)->IsSetName())

432

country = (*subsource)->GetName();

437  if

(latlon.empty() || country.empty())

445  string

new_latlon = it->second.first;

446  string

new_country = it->second.second;

450  if

((*subsource)->IsSetSubtype() &&

452

(*subsource)->IsSetName())

454

(*subsource)->SetName(new_latlon);

461  if

((*subsource)->IsSetSubtype() &&

463

&& (*subsource)->IsSetName())

465

(*subsource)->SetName(new_country);

478  if

((*it)->IsSource()) {

485  if

((*it)->IsSource()) {

488

new_desc->

Assign

(orig_desc);

517

new_feat->

Assign

(feat_it->GetOriginalFeature());

void AddCommand(IEditCommand &command)

static bool ShowToolTips()

Should we show tooltips?

CStringConstraintSelect * m_StringConstraintPanel

void x_ApplyToDescriptors(const objects::CSeq_entry &se, CCmdComposite *composite)

CRef< CCmdComposite > GetCommand()

map< pair< string, string >, pair< string, string > > m_LatLonCountry

CRef< CCmdComposite > GetCommandFromValuesTable(CRef< objects::CSeq_table >)

vector< string > m_Country

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void x_GatherLatLon(const objects::CBioSource &biosource)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

objects::CSeq_entry_Handle m_TopSeqEntry

vector< string > m_ReplaceLatLon

CSeqTableGridPanel * m_GridPanel

vector< string > m_LatLon

void x_FindBioSource(objects::CSeq_entry_Handle tse, CCmdComposite *composite=NULL)

~CCountryConflict()

Destructor.

CRef< objects::CSeq_table > GetChoices(CRef< objects::CSeq_table > values_table)

void OnClickOk(wxCommandEvent &event)

void OnClickCancel(wxCommandEvent &event)

bool x_ApplyToBioSource(objects::CBioSource &biosource)

void Init()

Initialises member variables.

bool IsReadOnlyColumn(string column_name)

bool Create(wxWindow *parent, wxWindowID id=wxID_ANY, const wxString &caption=_("Country Conflict Tool"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

void CreateControls()

Creates the controls and sizers.

CRef< objects::CSeq_table > GetValuesTableFromSeqEntry()

CCountryConflict()

Constructors.

void MakeColumnReadOnly(int pos, bool val=true)

void InitColumnCollapse(int col)

CRef< objects::CSeq_table > GetValuesTable()

namespace ncbi::objects::

const CSeqTable_column & GetColumn(CTempString column_name) const

static string ValidateLatLonCountry(const string &countryname, string &lat_lon, bool check_state, ELatLonCountryErr &errcode)

const_iterator end() const

const_iterator find(const key_type &key) const

USING_SCOPE(ncbi::objects)

const char * kSequenceIdColLabel

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

bool HasParentEntry(void) const

Check if current seq-entry has a parent.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

@ eSubtype_lat_lon

+/- decimal degrees

const TColumns & GetColumns(void) const

Get the Columns member data.

void SetHeader(THeader &value)

Assign a value to Header data member.

vector< CRef< CSeqTable_column > > TColumns

void SetData(TData &value)

Assign a value to Data data member.

TNum_rows GetNum_rows(void) const

Get the Num_rows member data.

const TString & GetString(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

@ eField_id_location_id

location Seq-id

void SetData(TData &value)

Assign a value to Data data member.

const TSet & GetSet(void) const

Get the variant data.

bool IsSet(void) const

Check if variant Set is selected.

TSource & SetSource(void)

Select the variant.

@ eMol_na

just a nucleic acid

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

const struct ncbi::grid::netcache::search::fields::SIZE size

Utility macros and typedefs for exploring NCBI objects from seqfeat.asn.

#define FOR_EACH_SUBSOURCE_ON_BIOSOURCE(Itr, Var)

FOR_EACH_SUBSOURCE_ON_BIOSOURCE EDIT_EACH_SUBSOURCE_ON_BIOSOURCE.

#define EDIT_EACH_SUBSOURCE_ON_BIOSOURCE(Itr, Var)

#define FOR_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

FOR_EACH_SEQENTRY_ON_SEQSET EDIT_EACH_SEQENTRY_ON_SEQSET.

#define FOR_EACH_SEQDESC_ON_SEQENTRY(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQENTRY EDIT_EACH_SEQDESC_ON_SEQENTRY.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

#define row(bind, expected)

wxString ToWxString(const string &s)

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