RetroSearch Browse

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/copy__loc_8cpp_source.html below:

NCBI C++ ToolKit: src/app/read_blast_result/copy_loc.cpp Source File

49 if

(!seq->IsSetAnnot())

continue

;

63 if

(!seq->IsSetAnnot())

continue

;

65

<< seq->GetAnnot().size() <<

" Annotations"

NcbiEndl

;

87 bool

find_tags=

false

;

91

prot_id = (*iter)->AsFastaString();

92 if

(tranStrMap.

find

(prot_id) != tranStrMap.

end

() &&

93

tranStrMap[prot_id].

find

(

type

) != tranStrMap[prot_id].

end

())

97

tranStrMap[prot_id][

type

].locus_tag); }

98 catch

(...) {find_tags=

false

; }

99 if

(find_tags)

break

;

107

" no location found" 141 if

(!(*seq.

GetAnnot

().begin())->GetData().IsFtable())

153 table

.push_back(feat);

157 string

comment =

"Genomic Location: "

;

167

CSeq_annot::C_Data::TFtable::iterator& feat,

172

cdregion = (*feat)->GetData().IsCdregion();

175 if

(!(*feat)->IsSetProduct())

return

;

176 if

(!(*feat)->GetProduct().IsWhole())

return

;

177 CSeq_loc

& loc = (*feat)->SetLocation();

178 const CSeq_id

& seqid = (*feat)->GetProduct().GetWhole();

181

tranStrMap[

key

][

type

].seqloc=&loc;

185

tranStrMap[

key

][

type

].sort_key=from;

189 template

typename

192 if

(!(*annot)->GetData().IsFtable())

static bool PrintDetails(int current_verbosity=m_current_verbosity)

void addLocation(string &prot_id, CBioseq &seq, CRef< CSeq_loc > &loc, const string &locus_tag)

static void IncreaseVerbosity(void)

void processFeature(CSeq_annot::C_Data::TFtable::iterator &feat, TranStrMap3 &tranStrMap)

TSimpleSeqs m_simple_seqs

void processAnnot(CBioseq::TAnnot::iterator &annot, t &tranStrMap)

int CollectSimpleSeqs(TSimpleSeqs &seqs)

int CopyInfoFromGenesToProteins(void)

===========================================================================

static void DecreaseVerbosity(void)

static void getFromTo(const CSeq_loc &loc, TSeqPos &from, TSeqPos &to, ENa_strand &strand)

namespace ncbi::objects::

const_iterator end() const

const_iterator find(const key_type &key) const

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

const string AsFastaString(void) const

static EAccessionInfo IdentifyAccession(const CTempString &accession, TParseFlags flags=fParse_AnyRaw)

Deduces information from a bare accession a la WHICH_db_accession; may report false negatives on prop...

EAccessionInfo

For IdentifyAccession (below)

void SetLocation(TLocation &value)

Assign a value to Location data member.

void SetComment(const TComment &value)

Assign a value to Comment data member.

void SetData(TData &value)

Assign a value to Data data member.

ENa_strand

strand of nucleic acid

bool IsSetAnnot(void) const

Check if a value has been assigned to Annot data member.

TAnnot & SetAnnot(void)

Assign a value to Annot data member.

const TAnnot & GetAnnot(void) const

Get the Annot member data.

list< CRef< CSeq_id > > TId

list< CRef< CSeq_feat > > TFtable

list< CRef< CSeq_annot > > TAnnot

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

const struct ncbi::grid::netcache::search::fields::KEY key

string GetStringDescr(const CBioseq &bioseq)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4