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NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/convert_feat_dlg.cpp Source File

(parent,

, caption, pos,

, style);

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

GetSizer()->SetSizeHints(

);

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemCBulkCmdDlg1->SetSizer(itemBoxSizer2);

wxStaticText* itemStaticText4 =

wxStaticText( itemCBulkCmdDlg1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

->Add(itemStaticText4, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxStaticText* itemStaticText5 =

wxStaticText( itemCBulkCmdDlg1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

->Add(itemStaticText5, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxStaticText* itemStaticText6 =

wxStaticText( itemCBulkCmdDlg1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

->Add(itemStaticText6, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

itemBoxSizer2->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

itemBoxSizer3->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

itemBoxSizer3->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

itemBoxSizer2->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

=

;

field_name =

;

vector<CConstRef<CObject> > objs;

ignore_selected =

;

(!sel_objs.empty()) {

any_feat =

;

vector<CConstRef<CObject> > sel_no_match;

objs.push_back(it->object);

sel_no_match.push_back(it->object);

(objs.empty() && any_feat) {

(!sel_no_match.empty()) {

answer = wxMessageBox(

(

),

(

), wxYES_NO | wxICON_QUESTION,

);

(answer == wxYES) {

answer = wxMessageBox(

(

),

(

), wxYES_NO | wxICON_QUESTION,

);

(answer == wxNO) {

vector<CConstRef<CObject> > these_objs = col->

(*bi);

objs.push_back (*it);

(objs.size() == 0) {

any_change =

;

(

->IsSetLocation())

(bioseq_to_offset.

(bsh) == bioseq_to_offset.

())

bioseq_to_offset[bsh] = 1;

->AddCommand(*subcmd);

(seh && already_done.

(seh) == already_done.

())

already_done.

(seh);

new_desc->SetUser(*user);

(CEnumeratedTypeValues::TValues::const_iterator

= qual_names.begin();

!= qual_names.end(); ++

)

qual_name =

->first;

qual_name =

;

res.

(

);

(!string_constraint)

negation = string_constraint->GetNegation();

field_name = feat_type +

+ *qi;

vector<string> val_list;

vector<string> add = col->

(**it);

val_list.insert(val_list.end(), add.begin(), add.end());

(!val_list.empty())

res = res && string_constraint->DoesListMatch(val_list);

res = res || string_constraint->DoesListMatch(val_list);

((*it)->IsBool()) {

wxCheckBox* opt =

wxCheckBox(

,

,

((*it)->GetLabel()), wxDefaultPosition, wxDefaultSize, 0 );

opt->SetValue((*it)->GetBool()->GetDefaultVal());

}

((*it)->IsString()) {

remaining = num_cols - col;

(

= 0;

< remaining;

++) {

->Add(5, 15, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxStaticText*

=

wxStaticText(

, wxID_STATIC,

((*it)->GetLabel()), wxDefaultPosition, wxDefaultSize, 0 );

vector<string>& suggested_values = (*it)->GetString()->GetSuggestedValues();

(suggested_values.size() == 0) {

wxTextCtrl*

=

wxTextCtrl(

,

, wxEmptyString, wxDefaultPosition, wxSize(300, -1), 0 );

->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

->SetValue((*it)->GetString()->GetDefaultVal());

}

((*it)->GetString()->GetOnlySuggested()) {

wxArrayString choice_strings;

(vector<string>, sit, suggested_values) {

wxChoice*

=

wxChoice(

,

, wxDefaultPosition, wxDefaultSize, choice_strings, 0 );

->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

->SetStringSelection((*it)->GetString()->GetDefaultVal());

wxArrayString choice_strings;

(vector<string>, sit, suggested_values) {

wxComboBox*

=

wxComboBox(

,

, wxEmptyString, wxDefaultPosition, wxDefaultSize, choice_strings, 0 );

->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

->SetStringSelection((*it)->GetString()->GetDefaultVal());

col = col % num_cols;

option_pos = 0;

(

pos = 0; pos <

->GetItemCount() && option_pos < options.size(); pos++) {

wxCheckBox* checkbox =

wxCheckBox*

(w);

(options[option_pos]->IsBool()) {

options[option_pos]->SetBool()->SetVal(checkbox->GetValue());

wxTextCtrl*

=

wxTextCtrl*

(w);

(options[option_pos]->IsString()) {

options[option_pos]->SetString()->SetVal(

(

->GetValue()));

wxComboBox* combo =

wxComboBox*

(w);

(options[option_pos]->IsString()) {

options[option_pos]->SetString()->SetVal(

(combo->GetStringSelection()));

wxChoice* choice =

wxChoice*

(w);

(options[option_pos]->IsString()) {

options[option_pos]->SetString()->SetVal(

(choice->GetStringSelection()));

User-defined methods of the data storage class.

bool IsGeneralIdProtPresent(objects::CSeq_entry_Handle tse)

TConstScopedObjects GetSelectedObjects()

objects::CSeq_entry_Handle m_TopSeqEntry

bool Create(wxWindow *parent, wxWindowID id, const wxString &title, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxDEFAULT_FRAME_STYLE, const wxString &name=wxFrameNameStr)

bool GetTopLevelSeqEntryAndProcessor()

void UpdateChildrenFeaturePanels(wxSizer *sizer)

virtual CRef< CCmdComposite > GetCommand()

void ProcessUpdateFeatEvent(wxCommandEvent &event)

wxCheckBox * m_AddUnverified

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

wxFlexGridSizer * m_OptionsSizer

bool DoesObjectAllQualsMatchFieldConstraint(const CObject &object, const set< string > &qual_list, CRef< edit::CStringConstraint > string_constraint, CRef< CScope > scope)

void CreateControls()

Creates the controls and sizers.

COkCancelPanel * m_OkCancel

CFeatureTypePanel * m_FeatureTypeFrom

void Init()

Initialises member variables.

void x_AddUnverified(objects::CBioseq_Handle bsh, CRef< CCmdComposite > cmd, set< objects::CSeq_entry_Handle > &already_done)

CConvertFeatDlg()

Constructors.

wxFlexGridSizer * m_FeatureChoiceSizer

~CConvertFeatDlg()

Destructor.

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

virtual string GetErrorMessage()

wxCheckBox * m_LeaveOriginal

bool Create(wxWindow *parent, wxWindowID id=10147, const wxString &caption=_("Convert Features"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

wxTextCtrl * m_FunctionDescriptionTxt

virtual void UpdateEditor()

CStringConstraintPanel * m_Constraint

set< string > GetQualList(void)

CFeatureTypePanel * m_FeatureTypeTo

CRef< CConvertFeatureBase > m_Converter

static bool ShowToolTips()

Should we show tooltips?

static CRef< CConvertFeatureBase > Create(objects::CSeqFeatData::ESubtype subtype_from, objects::CSeqFeatData::ESubtype subtype_to)

void SetCreateGeneralOnly(bool flag)

virtual bool CanConvertFrom(objects::CSeqFeatData::ESubtype subtype)

void SetOffset(int *offset)

virtual CRef< CCmdComposite > Convert(const objects::CSeq_feat &orig, bool keep_orig, objects::CScope &scope)

const TOptions & GetOptions() const

virtual string GetDescription()

vector< CRef< CConversionOption > > TOptions

void SetListAllFeats(bool flag)

virtual string GetFieldName(const bool subfield=false)

Returns the name of the field as selected in the panel.

void ListPresentFeaturesFirst(const objects::CSeq_entry_Handle &entry, vector< const objects::CFeatListItem * > *featlist=nullptr)

vector< CConstRef< CObject > > GetRelatedObjects(const CObject &object, CRef< objects::CScope > scope)

vector< string > GetVals(const CObject &object)

vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

@ eSubtype_transit_peptide_aa

@ eSubtype_sig_peptide_aa

@ eSubtype_mat_peptide_aa

static ESubtype SubtypeNameToValue(CTempString sName)

Turn a string into its ESubtype which is NOT necessarily related to the identifier of the enum.

namespace ncbi::objects::

CRef< edit::CStringConstraint > GetStringConstraint()

void SetObjectType(EObjectType obj_type)

void AddUnverifiedFeature()

IWorkbench is the central interface in the application framework.

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

const_iterator begin() const

const_iterator find(const key_type &key) const

const_iterator end() const

static const string kConversionNotSupported

static CSeqFeatData::ESubtype s_GetFeatureSubtypeFromString(const string &key)

#define ID_CF_LEAVE_ORIGINAL

#define ID_CF_FEATURETYPEFROM

#define ID_CF_ADD_UNVERIFIED

#define ID_CF_FUNCTION_DESC

#define ID_CF_FEATURETYPETO

const string kPartialStart

#define EVT_UPDATE_FEATURE_LIST(id, fn)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

list< pair< string, TEnumValueType > > TValues

vector< SConstScopedObject > TConstScopedObjects

#define ENUM_METHOD_NAME(EnumName)

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static const char label[]

EFeat_qual_legal

Access to EFeat_qual_legal's attributes (values, names) as defined in spec.

const struct ncbi::grid::netcache::search::fields::SIZE size

const struct ncbi::grid::netcache::search::fields::KEY key

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

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