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1 #ifndef ALGO_SEQ__CONSENSUS_SPLICE__HPP 2 #define ALGO_SEQ__CONSENSUS_SPLICE__HPP 43 const string& splice3)
55 const string& splice3)
63 const string& splice3)
bool IsConsensusSplice(const string &splice5, const string &splice3)
Consensus splice is GY..AG or AT..AC.
bool IsKnownNonConsensusSplice(const string &splice5, const string &splice3)
GT-{TG,GG,AT,AA} or {GA,TT,AT,GG}-AG or AT-{AT,AA}.
bool IsStrictConsensusSplice(const string &splice5, const string &splice3)
Strict consensus splice is GT..AG.
Include a standard set of the NCBI C++ Toolkit most basic headers.
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
static SIZE_TYPE FindNoCase(const CTempString str, const CTempString pattern, SIZE_TYPE start, SIZE_TYPE end, EOccurrence which=eFirst)
Find the pattern in the specified range of a string using a case insensitive search.
static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)
Case-insensitive equality of a substring with another string.
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