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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/comment__item_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/format/items/comment_item.hpp Source File

1 #ifndef OBJTOOLS_FORMAT_ITEMS___COMMENT_ITEM__HPP 2 #define OBJTOOLS_FORMAT_ITEMS___COMMENT_ITEM__HPP 102 const string

GetComment(

void

)

const

;

104 const

list<string>& GetCommentList(

void

)

const

;

106 bool

IsFirst(

void

)

const

;

107 void

SetFirst(

bool val

);

108 int

GetCommentInternalIndent(

void

)

const

;

110 bool

NeedPeriod(

void

)

const

;

111 void

SetNeedPeriod(

bool val

);

115 void

RemoveExcessNewlines(

const CCommentItem

& next_comment );

116 void

RemovePeriodAfterURL(

void

);

124 static const string

& GetNsAreGapsStr(

void

);

126 static string

GetStringForBankIt(

const CUser_object

& uo,

bool

dump_mode);

128

eGenomeBuildComment_No = 0,

129

eGenomeBuildComment_Yes

133

EGenomeBuildComment eGenomeBuildComment = eGenomeBuildComment_Yes

135 static string

GetStringForRefSeqGenome(

const CUser_object

& uo);

143 static

TRefTrackStatus GetRefTrackStatus(

const CUser_object

& uo,

166 void

x_GatherUserObjInfo(

const CUser_object

& userObject );

168 void

x_SetComment(

const string

& comment);

170 void

x_SetCommentWithURLlinks(

const string

& prefix,

const string

str

171 const string

& suffix,

CBioseqContext

ctx

, EPeriod can_add_period = ePeriod_Add );

183 bool

x_IsCommentEmpty(

void

)

const

;

191 static void

x_GetStringForOpticalMap_WriteFragmentLine(

196

EFragmentType eFragmentType);

209 static string

GetGenomeBuildNumber(

const CUser_object

& uo);

User-defined methods of the data storage class.

virtual void Format(IFormatter &formatter, IFlatTextOStream &text_os) const =0

virtual void x_GatherInfo(CBioseqContext &)

namespace ncbi::objects::

Base class for all serializable objects.

virtual EItem GetItemType(void) const =0

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * str(char *buf, int n)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

#define NCBI_FORMAT_EXPORT

void AddPeriod(string &str)

static SLJIT_INLINE sljit_ins st(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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