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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/columnar__vcf__iterator_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/widgets/loaders/columnar_vcf_iterator.hpp Source File

1 #ifndef GUI_WIDGETS___LOADERS___COLUMNAR_VCF_ITERATOR__HPP_ 2 #define GUI_WIDGETS___LOADERS___COLUMNAR_VCF_ITERATOR__HPP_ 39 #include <unordered_map> 66  size_t

GetSize()

const

;

68  unsigned

GetPosition()

const

;

79  bool

IsSetInfo()

const

;

80  string

GetInfo()

const

;

82  bool

IsSetInfoField(

const string

& field_name)

const

;

83  string

GetInfoField(

const string

& field_name)

const

;

85  bool

IsSetSample(

const string

& name)

const

;

86  string

GetSample(

const string

& name)

const

;

89  string

GetSampleCols()

const

;

96  bool

x_IsSetData(

const string

& col_name)

const

;

97  string

x_GetData(

const string

& col_name)

const

;

112  size_t

m_Current{ 0 };

114  const

vector<size_t>* m_IncludedItems{

nullptr

};

vector< pair< string, unique_ptr< TInfoCI > > > m_SampleIterators

string GetVariantID() const

vector< size_t >::const_iterator m_IndexIterator

CVCFVariant_CI(const CVCFVariant_CI &other)=delete

unique_ptr< vector< size_t > > m_Elements

unordered_map< string, unique_ptr< TSparseCI > > m_Iterators

CVCFVariant_CI & operator=(const CVCFVariant_CI &other)=delete

unordered_map< string, size_t > m_SampleIterMap

DECLARE_OPERATOR_BOOL(IsValid())

unordered_map< string, unique_ptr< TInfoCI > > m_InfoIterators

CConstRef< CVCFVariantsBase > m_Variants

static const string sm_ALT

CPosToIndex::TIndexVector TIndexVector

static const string sm_ID

static const string sm_FORMAT

static const string sm_REF

static const string sm_FILTER

CVariantDescriptors::TSparseStrVector TSparseStrVector

static const string sm_QUAL

bm::str_sparse_vector< char, bvector_type, sm_Infosize > TSparseOptVector

Rank-Select compressed sparse vector.

Const iterator to do quick traverse of the sparse vector.

succinct sparse vector for strings with compression using bit-slicing ( transposition) method

Include a standard set of the NCBI C++ Toolkit most basic headers.

bool operator==(const CEquivRange &A, const CEquivRange &B)

bool IsValid(const CSeq_point &pt, CScope *scope)

Checks that point >= 0 and point < length of Bioseq.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool operator!=(const CNCBI_IPAddr &lhs, unsigned int rhs)

#define NCBI_GUIWIDGETS_LOADERS_EXPORT

Defines to provide correct exporting from DLLs in Windows.

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