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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/collection__score_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/align/util/collection_score.cpp Source File

63  for

( vector<pair<string, TNamedScoreFactory> >::const_iterator

i

=

table

.begin();

i

!=

table

.end(); ++

i

) {

69  for

( vector<pair<string, TMultiScoresFactory> >::const_iterator

i

= table_multi_scores.begin();

i

!= table_multi_scores.end(); ++

i

) {

95  if

( !coll.

IsSet

() || coll.

Get

().empty() ) {

96  return

vector<CScoreValue>();

109  if

( !coll.

IsSet

() || coll.

Get

().empty() ) {

113  return i

->second->Set(

const_cast<CScope

&

>

(*

m_Scope

), coll);

117

vector<CScoreValue>

Get

(

string const

& group_name, vector<string>

const

& score_names,

CSeq_align_set const

& coll)

const 124  if

( !coll.

IsSet

() || coll.

Get

().empty() ) {

125  return

vector<CScoreValue>();

129  return

score->Get(

const_cast<CScope

&

>

(*

m_Scope

), coll);

132  void Set

(

string const

& group_name, vector<string>

const

& score_names,

CSeq_align_set

& coll)

const 139  if

( !coll.

IsSet

() || coll.

Get

().empty() ) {

172

vector<pair<string, TNamedScoreFactory> >

table

;

175  table

.push_back(make_pair(entry->name, entry->factory));

192

vector<pair<string, TMultiScoresFactory> >

table

;

195  table

.push_back(make_pair(entry->name, entry->factory));

void Set(string const &score_name, CSeq_align_set &coll) const

void Set(string const &group_name, vector< string > const &score_names, CSeq_align_set &coll) const

vector< CScoreValue > Get(string const &score_name, CSeq_align_set const &coll) const

CAlignmentCollectionScore()

CAlignmentCollectionScore(CScope &scope)

map< string, CIRef< INamedAlignmentCollectionScore > > m_Scores

vector< CScoreValue > Get(string const &group_name, vector< string > const &score_names, CSeq_align_set const &coll) const

map< string, TMultiScoresFactory > m_MultiScores

static CIRef< INamedAlignmentCollectionScore > Create()

static CIRef< INamedAlignmentCollectionScore > Create()

static CIRef< INamedAlignmentCollectionScore > Create(vector< string > score_names)

static CRef< IAlignmentCollectionScore > GetInstance()

const_iterator end() const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

static vector< pair< string, TNamedScoreFactory > > GetAlignmentCollectionScoreFactoryTable()

static struct tagMultiScoresFactory FactoryMultiScores[]

static vector< pair< string, TMultiScoresFactory > > GetMultiScoresFactoryTable()

CIRef< INamedAlignmentCollectionScore >(* TMultiScoresFactory)(vector< string > score_names)

static struct tagNamedScoreFactory Factory[]

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool IsSet(void) const

Check if a value has been assigned to data member.

const Tdata & Get(void) const

Get the member data.

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

CIRef< INamedAlignmentCollectionScore >(* TNamedScoreFactory)()

TMultiScoresFactory factory

TNamedScoreFactory factory

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