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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cn3d__app_8cpp_source.html below:

NCBI C++ ToolKit: src/app/cn3d/cn3d_app.cpp Source File

54 #include <wx/msw/winundef.h> 57 #include <wx/filesys.h> 58 #include <wx/fs_zip.h> 74 #if defined(__WXGTK__) || defined(__WXMAC__) 75 #include "cn3d42App.xpm" 83

IMPLEMENT_APP(Cn3D::Cn3DApp)

110 const

wxPoint& pos = wxDefaultPosition,

const

wxSize&

size

= wxDefaultSize) :

112

wxDEFAULT_FRAME_STYLE

113

defined(__WXMSW__)

114

| wxFRAME_TOOL_WINDOW | wxFRAME_NO_TASKBAR | wxFRAME_FLOAT_ON_PARENT

119

SetIcon(wxICON(cn3d));

126

DECLARE_EVENT_TABLE()

129

BEGIN_EVENT_TABLE(

MsgFrame

, wxFrame)

135 if

(event.CanVeto()) {

153

diagMsg.

Write

(errMsg);

159 static bool

avoidRecursion =

false

;

160 if

(!avoidRecursion) {

161

avoidRecursion =

true

;

162

wxMessageDialog dlg(

NULL

, errMsg.c_str(),

"Severe Error!"

, wxOK | wxCENTRE | wxICON_EXCLAMATION);

164

avoidRecursion =

false

;

181 backLog

.push_back(errMsg.c_str());

189 logFrame

new MsgFrame

(

"Cn3D Message Log"

, wxPoint(500, 0), wxSize(500, 500));

193

wxMenuBar *menuBar =

new

wxMenuBar;

198

wxPoint(0,0),

logFrame

->GetClientSize(), wxTE_RICH | wxTE_MULTILINE | wxTE_READONLY | wxHSCROLL);

208 #if defined(__WXMSW__) 215

BEGIN_EVENT_TABLE(

Cn3DApp

, wxApp

)

246 INFOMSG

(

"Built "

<< __DATE__ <<

" with wxWidgets "

<< wxVERSION_NUM_DOT_STRING);

249 INFOMSG

(

"This is a debug build"

);

251 INFOMSG

(

"This is a release build"

);

253 #ifdef _USE_TEST_MMDBSRV_ 254 INFOMSG

(

"This build uses a test mmdbsrv"

);

256 INFOMSG

(

"This build uses the standard mmdbsrv"

);

260 static const

wxCmdLineEntryDesc cmdLineDesc[] = {

261

{ wxCMD_LINE_SWITCH,

"h"

"help"

"show this help message"

262

wxCMD_LINE_VAL_NONE, wxCMD_LINE_OPTION_HELP },

263

{ wxCMD_LINE_SWITCH,

"r"

"readonly"

"message file is read-only"

264

wxCMD_LINE_VAL_NONE, wxCMD_LINE_PARAM_OPTIONAL },

265

{ wxCMD_LINE_SWITCH,

"i"

"imports"

"show imports window on startup"

266

wxCMD_LINE_VAL_NONE, wxCMD_LINE_PARAM_OPTIONAL },

267

{ wxCMD_LINE_SWITCH,

"n"

"noalign"

"do not show alignment window on startup"

268

wxCMD_LINE_VAL_NONE, wxCMD_LINE_PARAM_OPTIONAL },

269

{ wxCMD_LINE_SWITCH,

"f"

"force"

"force saves to same file"

270

wxCMD_LINE_VAL_NONE, wxCMD_LINE_PARAM_OPTIONAL },

271

{ wxCMD_LINE_OPTION,

"m"

"message"

"message file"

272

wxCMD_LINE_VAL_STRING, wxCMD_LINE_PARAM_OPTIONAL | wxCMD_LINE_NEEDS_SEPARATOR },

273

{ wxCMD_LINE_OPTION,

"a"

"targetapp"

"messaging target application name"

274

wxCMD_LINE_VAL_STRING, wxCMD_LINE_PARAM_OPTIONAL | wxCMD_LINE_NEEDS_SEPARATOR },

275

{ wxCMD_LINE_OPTION,

"o"

"model"

"model choice: alpha, single, or PDB"

276

wxCMD_LINE_VAL_STRING, wxCMD_LINE_PARAM_OPTIONAL | wxCMD_LINE_NEEDS_SEPARATOR },

277

{ wxCMD_LINE_OPTION,

"d"

"id"

"MMDB/PDB ID to load via network"

278

wxCMD_LINE_VAL_STRING, wxCMD_LINE_PARAM_OPTIONAL | wxCMD_LINE_NEEDS_SEPARATOR },

279

{ wxCMD_LINE_OPTION,

"s"

"style"

"preferred favorite style"

280

wxCMD_LINE_VAL_STRING, wxCMD_LINE_PARAM_OPTIONAL | wxCMD_LINE_NEEDS_SEPARATOR },

281

{ wxCMD_LINE_PARAM,

NULL

"input file"

282

wxCMD_LINE_VAL_STRING, wxCMD_LINE_PARAM_OPTIONAL},

289 case

TRACEMSG

(

"command line parsed successfully"

);

break

;

290 default

return false

;

294

wxFileSystem::AddHandler(

new

wxZipFSHandler);

300

wxString dictFile = wxString(

GetDataDir

().c_str()) +

"bstdt.val"

;

317

SetExitOnFrameDelete(

true

);

321 bool

showLog =

false

;

334 if

(modelStr ==

"alpha"

)

336 else if

(modelStr ==

"single"

)

338 else if

(modelStr ==

"PDB"

)

341 ERRORMSG

(

"Model type (-o) must be one of alpha|single|PDB"

);

346

wxString filename =

commandLine

.GetParam(0).c_str();

347 INFOMSG

(

"command line file: "

<< filename.c_str());

366 ERRORMSG

(

"-o requires either -d or Biostruc file name"

);

377

wxString messageFilename;

378 if

(

commandLine

.Found(

"m"

, &messageFilename)) {

381

messageApp =

"Listener"

;

424 #if wxCHECK_VERSION(2,9,0) 427

wxApp::OnIdle(event);

433 void

Cn3DApp::MacOpenFile(

const

wxString& filename)

435 if

(filename.size() > 0) {

436 INFOMSG

(

"apple open event file: "

<< filename);

User-defined methods of the data storage class.

void LoadStandardDictionary(const char *filename)

void DeleteStandardDictionary(void)

void ShowUpdateWindow(void) const

unsigned int NUpdates(void) const

wxCmdLineParser commandLine

StructureWindow * structureWindow

void OnIdle(wxIdleEvent &event)

OpenGLRenderer * renderer

StructureSet * structureSet

void ProcessRedraws(void)

MsgFrame(const wxString &title, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize)

void OnCloseWindow(wxCloseEvent &event)

void AttachStructureSet(StructureSet *targetStructureSet)

AlignmentManager * alignmentManager

void SetPreferredFavoriteStyle(const std::string &s)

void SetupFileMessenger(const std::string &messageFilename, const std::string &messageApp, bool readOnly)

bool LoadData(const char *filename, bool force, bool noAlignmentWindow, ncbi::objects::CNcbi_mime_asn1 *mimeData=NULL)

static list< string > backLog

void DisplayDiagnostic(const SDiagMessage &diagMsg)

void SetDialogSevereErrors(bool status)

void RaiseLogWindow(void)

wxFrame * GlobalTopWindow(void)

static wxFrame * topWindow

static bool dialogSevereErrors

static MsgFrame * logFrame

bool IsWindowedMode(void)

CNcbi_mime_asn1 * LoadStructureViaCache(const std::string &uid, ncbi::objects::EModel_type modelType, int assemblyId)

Include a standard set of the NCBI C++ Toolkit most basic headers.

CNcbi_mime_asn1 * CreateMimeFromBiostruc(const string &filename, EModel_type model)

void Write(string &str, TDiagWriteFlags flags=fNone) const

Binary OR of "EDiagWriteFlags".

void SetDiagPostFlag(EDiagPostFlag flag)

Set the specified flag (globally).

EDiagSev m_Severity

Severity level.

void UnsetDiagTraceFlag(EDiagPostFlag flag)

EDiagSev SetDiagPostLevel(EDiagSev post_sev=eDiag_Error)

Set the threshold severity for posting the messages.

void SetDiagHandler(CDiagHandler *handler, bool can_delete=true)

Set the diagnostic handler using the specified diagnostic handler class.

void SetDiagTrace(EDiagTrace how, EDiagTrace dflt=eDT_Default)

Set the diagnostic trace settings.

void SetDiagStream(CNcbiOstream *os, bool quick_flush=true, FDiagCleanup cleanup=0, void *cleanup_data=0, const string &stream_name="")

Set diagnostic stream.

@ eDPF_Location

Include class and function if any.

@ eDPF_File

File name (not full path)

@ eDT_Default

Restores the default tracing context.

@ eDiag_Trace

Trace message.

@ eDiag_Info

Informational message.

@ eDiag_Error

Error message.

static void SetVerifyDataGlobal(ESerialVerifyData verify)

@ eSerialVerifyData_Always

always verify (even if set not to later on)

static void SetVerifyDataGlobal(ESerialVerifyData verify)

Set up default output data verification for streams created by the current process.

static void SetVerifyDataGlobal(ESerialVerifyData verify)

Set up default input data verification for streams created by the current process.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

EModel_type

Access to EModel_type's attributes (values, names) as defined in spec.

@ eModel_type_ncbi_all_atom

@ eModel_type_ncbi_backbone

if(yy_accept[yy_current_state])

Messenger * GlobalMessenger(void)

const struct ncbi::grid::netcache::search::fields::SIZE size

Defines: CTimeFormat - storage class for time format.

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