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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cmd__propagate__feat_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/objutils/cmd_propagate_feat.cpp Source File

stop_at_stop,

cleanup_partials,

merge_abutting,

extend_over_gaps,

create_general_only,

edit::CFeaturePropagator propagator(src, target, align, stop_at_stop, cleanup_partials, merge_abutting, extend_over_gaps, listener, feat_id);

vector<CRef<CSeq_feat>> prop_feats = propagator.PropagateFeatureList(feat_list);

it = prop_feats.begin();

(it != prop_feats.end()) {

(feat.IsSetData() && feat.GetData().IsCdregion()) {

(prot_it != prop_feats.end() &&

(*prot_it)->IsSetData() && (*prot_it)->GetData().IsProt()) {

prot_feat->

(**prot_it);

vector<CRef<CSeq_id>> new_prot_id;

CRef< objects::CSeq_id > GetNewProtId(objects::CBioseq_Handle bsh, int &offset, string &id_label, bool general_only)

void AddCommand(IEditCommand &command)

static string s_GetProductSequence(const objects::CSeq_feat &cds, objects::CScope &scope)

Default implementation of IMessageListener: collects all messages posted.

namespace ncbi::objects::

void PropagateToTarget(CRef< CCmdComposite > composite, const vector< CConstRef< CSeq_feat >> &feat_list, CBioseq_Handle src, CBioseq_Handle target, const CSeq_align &align, bool stop_at_stop, bool cleanup_partials, bool merge_abutting, bool extend_over_gaps, bool create_general_only, CMessageListener_Basic *listener, CObject_id::TId *feat_id)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

TClass GetClass(void) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

bool CanGetClass(void) const

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

CScope & GetScope(void) const

Get scope this handle belongs to.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

@ eClass_nuc_prot

nuc acid and coded proteins

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