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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cmd__promote__cds_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/objutils/cmd_promote_cds.cpp Source File

62  if

(parent_entry.

IsSet

()

73  for

(; annot_ci; ++annot_ci) {

74  if

((*annot_ci).IsFtable()) {

82

new_annot->

SetData

().SetFtable();

90  const auto

& feat_list =

m_OrigAnnoteh

.GetSeq_annotCore()->GetData().GetFtable();

91  if

(feat_list.empty()) {

122  for

(; annot_ci; ++annot_ci) {

123  if

((*annot_ci).IsFtable()) {

131

new_annot->

SetData

().SetFtable();

148  if

(feat_list.empty()) {

155  return "Promote CDS"

;

objects::CBioseq_Handle GetBioseqForSeqFeat(const objects::CSeq_feat &f, objects::CScope &scope)

TClass GetClass(void) const

void Remove(void) const

Remove current annot.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CSeq_annot_EditHandle AttachAnnot(CSeq_annot &annot) const

Attach an annotation.

CBioseq_set_Handle GetParentBioseq_set(void) const

Get parent bioseq-set handle.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

CSeq_entry_EditHandle GetEditHandle(void) const

Get 'edit' version of handle.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

bool IsSetClass(void) const

CSeq_annot_EditHandle GetEditHandle(void) const

Get 'edit' version of handle.

CSeq_feat_EditHandle TakeFeat(const CSeq_feat_EditHandle &handle) const

CConstRef< CSeq_annot > GetSeq_annotCore(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

@ eClass_nuc_prot

nuc acid and coded proteins

void SetData(TData &value)

Assign a value to Data data member.

const TFtable & GetFtable(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

@ eMol_na

just a nucleic acid


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