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NCBI C++ ToolKit: include/gui/objutils/cmd_add_cds.hpp Source File

: m_seh(seh), m_Prot(

), m_create_general_only(create_general_only)

m_CDS.Reset(

objects::CSeq_feat);

objects::CSeq_entry_Handle

;

: m_seh(seh), m_Prot(

), m_prot_id(new_prot_id), m_other_prot_feats(other_prot_feats)

m_CDS.Reset(

objects::CSeq_feat);

s_GetProductSequence(

objects::CSeq_feat& cds, objects::CScope& scope);

x_AddMolinfoDescriptorToProtein();

x_AddProteinFeatures(

& seq_length);

objects::CSeq_entry_Handle

;

objects::CSeq_feat_EditHandle m_feh_CDS

CCmdAddCDS(objects::CSeq_entry_Handle &seh, const objects::CSeq_feat &cds, CRef< objects::CSeq_feat > prot, bool create_general_only)

CRef< objects::CSeq_feat > m_CDS

objects::CSeq_annot_EditHandle m_FTableCreated

objects::CSeq_entry_Handle m_seh

bool m_create_general_only

objects::CBioseq_EditHandle m_ProtHandle

CRef< objects::CSeq_feat > m_Prot

objects::CSeq_annot_EditHandle m_FTableCreated

objects::CBioseq_EditHandle m_ProtHandle

vector< CRef< objects::CSeq_feat > > m_other_prot_feats

objects::CSeq_feat_EditHandle m_feh_CDS

CRef< objects::CSeq_feat > m_CDS

vector< CRef< objects::CSeq_id > > m_prot_id

objects::CSeq_entry_Handle m_seh

CRef< objects::CSeq_feat > m_Prot

CCmdCreateCDS(objects::CSeq_entry_Handle &seh, const objects::CSeq_feat &cds, CRef< objects::CSeq_feat > prot, const vector< CRef< objects::CSeq_id > > &new_prot_id, const vector< CRef< objects::CSeq_feat > > &other_prot_feats=vector< CRef< objects::CSeq_feat > >())

Interface (functor) for object editing.

virtual void Unexecute()=0

Undo (opposite to Execute())

unsigned int TSeqPos

Type for sequence locations and lengths.

string GetLabel(const CSeq_id &id)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIOBJUTILS_EXPORT

Defines to provide correct exporting from DLLs in Windows.

string Execute(const string &cmmd, const vector< string > &args, const string &data=kEmptyStr)

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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