A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/clustalw__tool__job_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_alignment/clustalw_tool_job.cpp Source File

Go to the documentation of this file.

Go to the SVN repository for this file.

34 #include <wx/filename.h> 35 #include <wx/sstream.h> 36 #include <wx/txtstrm.h> 54  if

(!wxFileName::FileExists(clustalwExe)) {

65

wxStringOutputStream strstr;

66

wxTextOutputStream os(strstr);

68 #if defined(__WINDOWS__) 69

os <<

wxT

(

"\""

) << clustalwExe <<

wxT

(

"\""

)

71

os <<

wxT

(

"'"

) << clustalwExe <<

wxT

(

"'"

)

75

<<

wxT

(

" -OUTPUT=FASTA"

)

79

os <<

wxT

(

" -OUTPUTTREE=nexus"

)

85

moreParams.Trim(

true

);

86

moreParams.Trim(

false

);

87  if

(!moreParams.empty())

88

os <<

wxT

(

" "

) << moreParams;

90

wxString cmdline = strstr.GetString();

92 #if defined(__WINDOWS__) 93  return

strstr.GetString();

95  return "sh -c \""

+ strstr.GetString() +

"\""

;

static SQLCHAR output[256]

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

CClustalwToolParams m_Params

wxString GetClustalWExecutable() const

virtual wxString x_GetCommandLine(const wxString &input, const wxString &output, bool is_nucleotide)

Returns the command line, that will be used to execute the third-party tool.

CClustalwToolJob(const CClustalwToolParams &params)

CClustalwToolJob.

wxString GetCommandLine() const

bool GetGenerateTree() const

string m_Descr

mutex to sync our internals

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4