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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/clustalw__tool_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_alignment/clustalw_tool.cpp Source File

50  "Create an alignment using ClustalW2"

,

51  "ClustalW is a general purpose DNA or protein multiple sequence alignment program"

,

52  "https://www.ncbi.nlm.nih.gov/tools/gbench/manual5/#MSATools"

,

53  "Multiple Sequence Aligners"

),

60  return "clustalw_tool"

;

66  return "ClustalW Tool"

;

CDataLoadingAppJob - a base class for Jobs loading data into projects.

IRegSettings An interface for objects that save / restore settings using CGuiRegistry.

virtual bool x_ValidateParams()

validates user input in Parameters panel, report errors if any

virtual wxPanel * GetMaxPanel()

Return the panel that occupies max size on display, to calculate dialog window size.

CClustalwToolParams m_Params

virtual bool x_CreateParamsPanelIfNeeded()

returns / creates Parameters panel, override in derived classes see cpp file for example

virtual void InitUI()

override this function in a derived class and initialize extra members

virtual CDataLoadingAppJob * x_CreateLoadingJob()

factory method for creating the job that executes the tool algorithm override in derived classes

virtual CAlgoToolManagerParamsPanel * x_GetParamsPanel()

returns a pointer to the parameters panel, override in derived classes

CClustalwToolPanel * m_Panel

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

CClustalwTool()

CClustalwTool.

void x_SelectCompatibleInputObjects()

virtual void CleanUI()

override this function in a derived class and clean extra members

virtual IRegSettings * x_GetParamsAsRegSetting()

return a pointer to Parameters object as IRegSettings interface

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.


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