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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/cleanup__tool_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence/cleanup_tool.cpp Source File

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vector<string_view> changes_str = changes->GetDescriptions();

(

& it : changes_str) {

changelist +=

(it);

changelist =

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* ptr = it->object.GetPointer();

.BasicCleanup(obj_ref) :

.ExtendedCleanup(obj_ref);

errmsg +=

;

.BasicCleanup(obj_ref) :

.ExtendedCleanup(obj_ref);

errmsg +=

;

.BasicCleanup(obj_ref) :

.ExtendedCleanup(obj_ref);

errmsg +=

;

changes =

.BasicCleanup(bh);

errmsg +=

;

User-defined methods of the data storage class.

virtual void x_CreateProjectItems()

override this function in derived classes and populate m_Items.

CCleanupJob(const CCleanupParams &params)

CDataLoadingAppJob - a base class for Jobs loading data into projects.

CDataLoadingAppTask - a task that executes CDataLoadingAppJob.

CProjectService - a service providing API for operations with Workspaces and Projects.

CProjectSelectOptions - describes how new Project Items shall be added to a workspace.

IRegSettings An interface for objects that save / restore settings using CGuiRegistry.

static void cleanup(void)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

const string & GetMsg(void) const

Get message string.

void Info(CExceptionArgs_Base &args)

CIRef< T > GetServiceByType()

retrieves a typed reference to a service, the name of C++ type is used as the name of the service.

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual CAlgoToolManagerParamsPanel * x_GetParamsPanel()

returns a pointer to the parameters panel, override in derived classes

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

virtual void LoadSettings()

virtual bool DoTransition(EAction action)

Performs transition if possible and returns true, otherwise the function shall warn the user about th...

virtual bool x_CreateParamsPanelIfNeeded()

returns / creates Parameters panel, override in derived classes see cpp file for example

virtual CDataLoadingAppJob * x_CreateLoadingJob()

factory method for creating the job that executes the tool algorithm override in derived classes

CCleanupTool()

CCleanupTool.

int GetCleanupMode() const

virtual IRegSettings * x_GetParamsAsRegSetting()

return a pointer to Parameters object as IRegSettings interface

const TConstScopedObjects & GetObjects() const

void SetData(const CCleanupParams &data)

virtual void InitUI()

override this function in a derived class and initialize extra members

virtual bool IsFinalState()

True if Tool Manager has reached its final state, i.e.

TConstScopedObjects m_Objects

virtual void CleanUI()

override this function in a derived class and clean extra members

virtual bool x_ValidateParams()

validates user input in Parameters panel, report errors if any

CCleanupParams & GetData()

Data access.

bool Create(wxWindow *parent, wxWindowID id=ID_CCLEANUPPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

Creation.

void SetObjects(TConstScopedObjects *objects)

virtual void x_SelectCompatibleInputObjects()

virtual IAppTask * GetTask()

Once parameters are gathered and validated this function is called to produce the final Task object t...

string m_Descr

mutex to sync our internals

vector< SConstScopedObject > TConstScopedObjects

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

TObjectType * Release(void)

Release a reference to the object and return a pointer to the object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

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