Search Toolkit Book for importance_sampling
#include "sls_alp_data.hpp"
(Private to src/algo/blast/gumbel_params.)
Definition at line 263 of file sls_alp_data.hpp.
◆ importance_sampling() importance_sampling::importance_sampling ( alp_data * alp_data_, Int4 open_, Int4 epen_, Int4 number_of_AA_, Int4 ** smatr_, double * RR1_, double * RR2_ )Definition at line 1203 of file sls_alp_data.cpp.
References a, alp_data::assert_mem(), b, q_elem::d_a, d_alp_data, q_elem::d_b, d_elements, d_elements_values, d_eta, d_exp_s, d_for_D, d_for_D_states, d_for_I, d_for_I_states, d_for_S, d_for_S_states, d_is_number_of_AA, d_lambda, alp_data::d_memory_size_in_MB, d_mu, d_mu_DS, d_mu_ID, d_mu_IS, d_mu_SD, d_mu_SI, d_nu, data_for_lambda_equation::d_number_of_AA, data_for_lambda_equation::d_RR1, data_for_lambda_equation::d_RR2, data_for_lambda_equation::d_smatr, d_ungap_lambda, error::error_code, fabs, alp_reg::find_tetta_general(), alp_data::get_memory_for_matrix(), i, kMax_I4, kMin_I4, lambda_equation(), log, mb_bytes, NULL, ct::sort(), error::st, alp_data::Tmax(), alp_data::Tmin(), tmp, and ~importance_sampling().
◆ ~importance_sampling() importance_sampling::~importance_sampling ( ) ◆ lambda_equation() double importance_sampling::lambda_equation ( double x_, void * func_number_ ) static ◆ d_alp_data alp_data* importance_sampling::d_alp_data ◆ d_elements q_elem* importance_sampling::d_elements ◆ d_elements_values double* importance_sampling::d_elements_values ◆ d_eta double importance_sampling::d_eta ◆ d_exp_s double** importance_sampling::d_exp_s ◆ d_for_D double importance_sampling::d_for_D[3] ◆ d_for_D_states char importance_sampling::d_for_D_states[3] ◆ d_for_I double importance_sampling::d_for_I[2] ◆ d_for_I_states char importance_sampling::d_for_I_states[2] ◆ d_for_S double importance_sampling::d_for_S[3] ◆ d_for_S_states char importance_sampling::d_for_S_states[3] ◆ d_is_number_of_AA Int4 importance_sampling::d_is_number_of_AA ◆ d_lambda double importance_sampling::d_lambda ◆ d_mu double importance_sampling::d_mu ◆ d_mu_DS double importance_sampling::d_mu_DS ◆ d_mu_ID double importance_sampling::d_mu_ID ◆ d_mu_IS double importance_sampling::d_mu_IS ◆ d_mu_SD double importance_sampling::d_mu_SD ◆ d_mu_SI double importance_sampling::d_mu_SI ◆ d_nu double importance_sampling::d_nu ◆ d_ungap_lambda double importance_sampling::d_ungap_lambdaThe documentation for this class was generated from the following files:
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