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NCBI C++ ToolKit: TMaskedQueryRegions Class Reference

Search Toolkit Book for TMaskedQueryRegions

Collection of masked regions for a single query sequence. More...

#include <objects/seq/seqlocinfo.hpp>

Collection of masked regions for a single query sequence.

Definition at line 112 of file seqlocinfo.hpp.

◆ ConvertToCPacked_seqint() CRef< objects::CPacked_seqint > TMaskedQueryRegions::ConvertToCPacked_seqint ( ) const ◆ HasNegativeStrandMasks() bool TMaskedQueryRegions::HasNegativeStrandMasks ( ) const ◆ RestrictToSeqInt()

Return a new instance of this object that is restricted to the location specified.

Parameters
location location describing the range to restrict. Note that only the provided range is examined, the Seq-id and strand of the location (if assigned and different from unknown) is copied verbatim into the return value of this method [in]
Returns
empty TMaskedQueryRegions if this object is empty, otherwise the intersection of location and this object

Definition at line 98 of file seqlocinfo.cpp.

References CSeq_interval_Base::CanGetStrand(), eNa_strand_unknown, CRange_Base::GetFrom(), CSeq_interval_Base::GetFrom(), CSeq_interval_Base::GetId(), CSeq_interval_Base::GetStrand(), CSeq_interval_Base::GetTo(), COpenRange< Position >::GetToOpen(), COpenRange< Position >::IntersectionWith(), ITERATE, NMacroArgs::kStrand, location, mask, COpenRange< Position >::NotEmpty(), COpenRange< Position >::SetToOpen(), and si.

Referenced by BOOST_AUTO_TEST_CASE().

The documentation for this class was generated from the following files:

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