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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classSequenceViewer.html below:

NCBI C++ ToolKit: SequenceViewer Class Reference

Search Toolkit Book for SequenceViewer

#include "sequence_viewer.hpp"
(Private to src/app/cn3d.)

Definition at line 52 of file sequence_viewer.hpp.

◆ SequenceList ◆ eExportType ◆ SequenceViewer() ◆ ~SequenceViewer() ◆ CreateSequenceWindow() void SequenceViewer::CreateSequenceWindow ( bool  showNow ) private

Definition at line 74 of file sequence_viewer.cpp.

References ViewerBase::GetCurrentDisplay(), SequenceDisplay::GetStartingColumn(), GlobalMessenger(), ViewerWindowBase::NewDisplay(), Messenger::PostRedrawSequenceViewer(), ViewerWindowBase::ScrollToColumn(), SequenceViewerWindow, sequenceWindow, and Messenger::UnPostRedrawSequenceViewer().

Referenced by DisplayAlignment(), DisplaySequences(), AlignmentManager::ShowSequenceViewer(), and TurnOnEditor().

◆ DisplayAlignment()

Definition at line 116 of file sequence_viewer.cpp.

References SequenceDisplay::AddRowFromAlignment(), CreateSequenceWindow(), BlockMultipleAlignment::GetFirstAlignedBlockPosition(), ViewerBase::InitData(), IsWindowedMode(), BlockMultipleAlignment::NRows(), row, SequenceDisplay, sequenceWindow, SequenceDisplay::SetStartingColumn(), ViewerWindowBase::UpdateDisplay(), and ViewerBase::viewerWindow.

Referenced by AlignmentManager::MergeUpdates(), and AlignmentManager::NewMultipleWithRows().

◆ DisplaySequences()

Definition at line 162 of file sequence_viewer.cpp.

References SequenceDisplay::AddRowFromSequence(), SequenceDisplay::AddRowFromString(), CreateSequenceWindow(), ViewerBase::InitData(), IsWindowedMode(), SequenceDisplay::NRows(), NULL, SequenceDisplay, sequenceWindow, ViewerWindowBase::UpdateDisplay(), and ViewerBase::viewerWindow.

Referenced by AlignmentManager::NewAlignments().

◆ ExportAlignment() void SequenceViewer::ExportAlignment ( eExportType  type ) ◆ ReplaceAlignment()

Definition at line 134 of file sequence_viewer.cpp.

References SequenceDisplay::AddBlockBoundaryRow(), SequenceDisplay::AddRowFromAlignment(), DELETE_ALL_AND_CLEAR, ViewerWindowBase::EditorIsOn(), SequenceDisplay::Empty(), ERRORMSG, ViewerBase::GetCurrentAlignments(), ViewerBase::GetCurrentDisplay(), BlockMultipleAlignment::GetFirstAlignedBlockPosition(), BlockMultipleAlignment::NRows(), row, ViewerBase::Save(), sequenceWindow, SequenceDisplay::SetStartingColumn(), and ViewerWindowBase::UpdateDisplay().

◆ SaveAlignment() void SequenceViewer::SaveAlignment ( void  ) ◆ TurnOnEditor() void SequenceViewer::TurnOnEditor ( void  ) ◆ AlignmentManager ◆ SequenceDisplay ◆ SequenceViewerWindow ◆ sequenceWindow

The documentation for this class was generated from the following files:

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