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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classMatrix.html below:

NCBI C++ ToolKit: Matrix< T

#include "njn_matrix.hpp"
(Private to src/algo/blast/gumbel_params.)

Matrix () Matrix (const Matrix &matrix_) Matrix (size_t m_, size_t n_, const T *vector_) Matrix (size_t m_, size_t n_, T a_=static_cast< T >(0)) virtual ~Matrix () Matrix & operator= (const Matrix &matrix_) virtual void * create (bool isCopy_=false) const virtual void copy (size_t m_, size_t n_, const T *const *matrix_) virtual void copy (size_t m_, size_t n_, const T *vector_) virtual void copy (size_t m_, size_t n_, T a_=static_cast< T >(0)) virtual operator bool () const virtual std::ostream & out (std::ostream &ostr_) const virtual std::istream & in (std::istream &istr_) virtual Matrix & operator= (const T &a_) virtual T * operator[] (size_t i_) virtual const T * operator[] (size_t i_) const virtual T & setValue () virtual size_t getM () const virtual size_t getN () const virtual const T *const * getMatrix () const virtual const T getValue () const Matrix (unsigned int nBlocks, unsigned int nResidues) ResidueRow & operator[] (unsigned int block) const ResidueRow & operator[] (unsigned int block) const Matrix (double m0=1, double m1=0, double m2=0, double m3=0, double m4=0, double m5=1, double m6=0, double m7=0, double m8=0, double m9=0, double m10=1, double m11=0, double m12=0, double m13=0, double m14=0, double m15=1) Matrix (const Matrix &o) void SetToIdentity (void) Matrix & operator= (const Matrix &o) double & operator[] (unsigned int i) double operator[] (unsigned int i) const static Matrix< T > * matrix (size_t k_, size_t m_, size_t n_, T a_=static_cast< T >(0)) static bool approx (const Matrix< T > &x_, const Matrix< T > &y_, T eps_) static bool relApprox (const Matrix< T > &x_, const Matrix< T > &y_, T eps_) static bool absRelApprox (const Matrix< T > &x_, const Matrix< T > &y_, T tol_, T rtol_) static bool isSymmetric (const Matrix< T > &x_) virtual void init (size_t m_, size_t n_) virtual void free () template<typename T>
class Matrix< T >

Definition at line 56 of file njn_matrix.hpp.

◆ Grid ◆ ResidueRow ◆ Matrix() [1/7] ◆ Matrix() [2/7] ◆ Matrix() [3/7] ◆ Matrix() [4/7] ◆ ~Matrix() ◆ Matrix() [5/7] ◆ Matrix() [6/7]

template<typename T >

Matrix< T >::Matrix ( double m0 = 1, double m1 = 0, double m2 = 0, double m3 = 0, double m4 = 0, double m5 = 1, double m6 = 0, double m7 = 0, double m8 = 0, double m9 = 0, double m10 = 1, double m11 = 0, double m12 = 0, double m13 = 0, double m14 = 0, double m15 = 1 ) inline ◆ Matrix() [7/7] ◆ absRelApprox() ◆ approx() ◆ copy() [1/3] ◆ copy() [2/3]

template<typename T >

void Matrix< T >::copy ( size_t m_, size_t n_, const T * vector_ ) inlinevirtual ◆ copy() [3/3]

template<typename T >

void Matrix< T >::copy ( size_t m_, size_t n_, T a_ = static_cast <T> (0) ) inlinevirtual ◆ create() ◆ free() ◆ getM()

template<typename T >

virtual size_t Matrix< T >::getM ( ) const inlinevirtual ◆ getMatrix() ◆ getN()

template<typename T >

virtual size_t Matrix< T >::getN ( ) const inlinevirtual ◆ getValue() ◆ in()

template<typename T >

std::istream & Matrix< T >::in ( std::istream & istr_ ) inlinevirtual

Definition at line 355 of file njn_matrix.hpp.

References abort(), assert, clearFormat(), free(), GENERAL, getFormat(), getLine(), HUMAN, i, init(), MACHINE, n, SYMMETRIC, T, USING_SCOPE, and rapidjson::value.

◆ init()

template<typename T >

void Matrix< T >::init ( size_t m_, size_t n_ ) inlineprivatevirtual ◆ isSymmetric() ◆ matrix()

template<typename T >

Matrix< T > * Matrix< T >::matrix ( size_t k_, size_t m_, size_t n_, T a_ = static_cast <T> (0) ) inlinestatic ◆ operator bool() ◆ operator=() [1/3] ◆ operator=() [2/3] ◆ operator=() [3/3] ◆ operator[]() [1/6] ◆ operator[]() [2/6] ◆ operator[]() [3/6] ◆ operator[]() [4/6] ◆ operator[]() [5/6]

template<typename T >

double& Matrix< T >::operator[] ( unsigned int i ) inline ◆ operator[]() [6/6]

template<typename T >

double Matrix< T >::operator[] ( unsigned int i ) const inline ◆ out()

template<typename T >

std::ostream & Matrix< T >::out ( std::ostream & ostr_ ) const inlinevirtual ◆ relApprox() ◆ SetToIdentity()

template<typename T >

void Matrix< T >::SetToIdentity ( void ) inline ◆ setValue() ◆ d_m ◆ d_matrix_p ◆ d_n ◆ d_value ◆ grid ◆ m

Definition at line 168 of file vector_math.hpp.

Referenced by ApplyTransformation(), GL2Matrix(), InvertInto(), Matrix< T >::Matrix(), Matrix2GL(), Matrix< T >::operator=(), Matrix< T >::operator[](), SetRotationMatrix(), SetScaleMatrix(), Matrix< T >::SetToIdentity(), and StructureObject::SetTransformToMaster().

The documentation for this class was generated from the following files:

src/algo/blast/gumbel_params/njn_matrix.hpp
src/algo/structure/struct_dp/block_align.cpp
src/app/cn3d/vector_math.hpp

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