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NCBI C++ ToolKit: IScoringMethod Class Reference

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IScoringMethod represents an abstract algorithm for calculating alignment scores and assigning colors to residues. More...

#include <gui/widgets/aln_score/scoring_method.hpp>

IScoringMethod represents an abstract algorithm for calculating alignment scores and assigning colors to residues.

IScoringMethod has a unique Name that identifies the method and Description that can contain detailed information about the method. Method Type indicates whether it can be applied to DNA or Protein alignments (or both). Method is defined as "Averageable" is scores produced by the method can be calculated for the interval not only for individual residues.

Definition at line 58 of file scoring_method.hpp.

◆ TScore ◆ TScoreColl ◆ TScoreVector ◆ EColorType ◆ ~IScoringMethod() virtual IScoringMethod::~IScoringMethod ( ) inlinevirtual

Definition at line 74 of file scoring_method.hpp.

◆ GetAlignmentTagByType() ◆ GetAlignmentTypeByTag() ◆ GetColorForNoScore() ◆ GetColorForScore() ◆ GetSupportedColorTypes() virtual int IScoringMethod::GetSupportedColorTypes ( ) const pure virtual

returns a combination of EColorType flags

Implemented in CNonSynonymousScoringMethod, CMatrixScoringMethod, CColumnScoringMethod, CColorTableMethod, CTestSeqBasedMethod, CSNPScoringMethod, CSimpleScoringMethod, CTemplateScoringMethod, CConservationScoringMethod, and CQualityScoringMethod.

Referenced by CSGAlnOtherScore::GetSupportedColorTypes(), and CAlnVecRow::x_RenderSequence().

◆ GetType() virtual int IScoringMethod::GetType ( ) const pure virtual ◆ IsAverageable() virtual bool IScoringMethod::IsAverageable ( ) const pure virtual ◆ SetColorForNoScore() ◆ sm_DefGradientSize const int IScoringMethod::sm_DefGradientSize = 32 static

The documentation for this class was generated from the following files:

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