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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/classCVDBGraphDb__Impl.html below:

NCBI C++ ToolKit: CVDBGraphDb_Impl Class Reference

Search Toolkit Book for CVDBGraphDb_Impl

#include <sra/readers/sra/graphread.hpp>

CVDBGraphDb_Impl (CVDBMgr &mgr, CTempString path, ELookupType lookup_type=eLookupDefault) virtual ~CVDBGraphDb_Impl (void) bool HasMidZoomGraphs (void) bool LookupIsInVDB () const bool LookupIsInMemory () const CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const

Definition at line 62 of file graphread.hpp.

◆ TSeqInfoList ◆ TSeqInfoMapByFirstRow ◆ TSeqInfoMapBySeq_id ◆ CVDBGraphDb_Impl()

Definition at line 103 of file graphread.cpp.

References _ASSERT, CVDBTableIndex::eMissing_Allow, CSraException::eNotFoundTable, ERR_POST, CVDBTableIndex::Find(), CSraException::GetErrCode(), CSeq_id_Handle::GetHandle(), CSraException::GetRC(), Graph(), GraphTable(), info, map_checker< Container >::insert(), len, LookupIsInMemory(), m_GraphTable, m_LookupIndex, m_SeqList, m_SeqMapByFirstRow, m_SeqMapBySeq_id, NCBI_THROW2_FMT, NON_CONST_ITERATE, Put(), row, and Warning().

◆ ~CVDBGraphDb_Impl() CVDBGraphDb_Impl::~CVDBGraphDb_Impl ( void ) virtual

Definition at line 203 of file graphread.cpp.

◆ GetPath() ◆ GetSeqInfo()

Definition at line 274 of file graphread.cpp.

References map_checker< Container >::end(), map_checker< Container >::find(), CVDBTableIndex::Find(), CTextseq_id_Base::GetAccession(), CSeq_id_Handle::GetSeqId(), CTextseq_id_Base::GetVersion(), Graph(), info, CTextseq_id_Base::IsSetAccession(), CTextseq_id_Base::IsSetName(), CTextseq_id_Base::IsSetRelease(), CTextseq_id_Base::IsSetVersion(), m_LookupIndex, m_SeqInfoMutex, m_SeqMapBySeq_id, NStr::NumericToString(), Put(), and NStr::ToUpper().

Referenced by CVDBGraphSeqIterator::CVDBGraphSeqIterator().

◆ GetSeqInfoAtRow()

Definition at line 229 of file graphread.cpp.

References _ASSERT, CVDBValue::eMissing_Allow, ctll::empty(), map_checker< Container >::end(), map_checker< Container >::find(), CVDBTableIndex::Find(), CSeq_id_Handle::GetHandle(), Graph(), info, m_LookupIndex, m_SeqInfoMutex, m_SeqMapByFirstRow, and Put().

Referenced by CVDBGraphSeqIterator::CVDBGraphSeqIterator().

◆ GetSeqInfoList() ◆ GetSeqInfoMapBySeq_id() ◆ Graph() ◆ GraphTable() ◆ HasMidZoomGraphs() bool CVDBGraphDb_Impl::HasMidZoomGraphs ( void ) ◆ LookupIsInMemory() [1/2] bool CVDBGraphDb_Impl::LookupIsInMemory ( ) const inline ◆ LookupIsInMemory() [2/2] ◆ LookupIsInVDB() bool CVDBGraphDb_Impl::LookupIsInVDB ( ) const inline ◆ Put() ◆ CVDBGraphSeqIterator ◆ m_Graph ◆ m_GraphTable ◆ m_LookupIndex ◆ m_Mgr ◆ m_Path string CVDBGraphDb_Impl::m_Path private ◆ m_SeqInfoMutex CMutex CVDBGraphDb_Impl::m_SeqInfoMutex private ◆ m_SeqList ◆ m_SeqMapByFirstRow ◆ m_SeqMapBySeq_id

The documentation for this class was generated from the following files:

include/sra/readers/sra/graphread.hpp
src/sra/readers/sra/graphread.cpp

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