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NCBI C++ ToolKit: CTabularFormatter_ProtRef Class Reference
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formatter for dumping sequence Prot-refs (protein only) More...
#include <algo/align/util/tabular_fmt.hpp>
CTabularFormatter_ProtRef (int row) void PrintHelpText (CNcbiOstream &ostr) const void PrintHeader (CNcbiOstream &ostr) const void Print (CNcbiOstream &ostr, const objects::CSeq_align &align) virtual ~IFormatter () void SetScoreLookup (objects::CScoreLookup *scores) virtual void SetGencoll (CConstRef< objects::CGC_Assembly >) CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const
formatter for dumping sequence Prot-refs (protein only)
Definition at line 456 of file tabular_fmt.hpp.
◆ CTabularFormatter_ProtRef() CTabularFormatter_ProtRef::CTabularFormatter_ProtRef ( int row )
Definition at line 1260 of file tabular_fmt.cpp.
◆ Print() void CTabularFormatter_ProtRef::Print ( CNcbiOstream & ostr, const objects::CSeq_align & align ) virtual
Implements CTabularFormatter::IFormatter.
Definition at line 1294 of file tabular_fmt.cpp.
References CSeq_align::CheckNumRows(), CSeqFeatData_Base::e_Prot, eUnknown, CSeq_feat_Handle::GetData(), CSeq_id_Handle::GetHandle(), CProt_ref::GetLabel(), CSeqFeatData_Base::GetProt(), CSeq_align::GetSeq_id(), CAnnotTypes_CI::GetSize(), SAnnotSelector::IncludeFeatType(), m_Row, CTabularFormatter::IFormatter::m_Scores, NCBI_THROW, and SAnnotSelector::SetResolveTSE().
◆ PrintHeader() void CTabularFormatter_ProtRef::PrintHeader ( CNcbiOstream & ostr ) const virtual ◆ PrintHelpText() void CTabularFormatter_ProtRef::PrintHelpText ( CNcbiOstream & ostr ) const virtual ◆ m_Row int CTabularFormatter_ProtRef::m_Row private
The documentation for this class was generated from the following files:
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