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NCBI C++ ToolKit: CTableDataGCAssembly Class Reference
Search Toolkit Book for CTableDataGCAssembly
enum EColType {
eSeq_Id = 0 , eRefSeq_Acc , eGenBank_Acc , eChromosome ,
eRole , eStatus , eParent , eUnit ,
ePatchType , eMaxColNum
} enum EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } Control filling of newly allocated memory. More...
typedef CObjectCounterLocker TLockerType Default locker type for CRef. More...
typedef atomic< Uint8 > TCounter Counter type is CAtomiCounter. More...
typedef Uint8 TCount Alias for value type of counter. More...
enum ColumnType {
kNone , kInt , kReal , kString ,
kBytes , kCommonString , kCommonBytes , kObject
} virtual void LoadData () virtual ColumnType GetColumnType (size_t col) const virtual string GetColumnLabel (size_t col) const virtual size_t GetRowsCount () const virtual size_t GetColsCount () const virtual void GetStringValue (size_t row, size_t col, string &value) const virtual long GetIntValue (size_t row, size_t col) const virtual double GetRealValue (size_t row, size_t col) const virtual SConstScopedObject GetObjectValue (size_t row, size_t col) const virtual SConstScopedObject GetRowObject (size_t row) const CObject (void) Constructor. More...
CObject (const CObject &src) Copy constructor. More...
virtual ~CObject (void) Destructor. More...
CObject & operator= (const CObject &src) THROWS_NONE Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE Check if object is referenced only once. More...
void AddReference (void) const Add reference to object. More...
void RemoveReference (void) const Remove reference to object. More...
void ReleaseReference (void) const Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void) Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void) Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size) Define new operator for memory allocation. More...
void * operator new[] (size_t size) Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr) Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr) Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place) Define new operator. More...
void operator delete (void *ptr, void *place) Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place) Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place) Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const Define method for dumping debug information. More...
CDebugDumpable (void) virtual ~CDebugDumpable (void) void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const void DumpToConsole (void) const virtual string GetTableTypeId () const virtual ~ITableData () virtual bool IsHtmlColumn (size_t col) const virtual string GetRowLabel (size_t) const virtual vector< string > GetColumnCommonStrings (size_t) const virtual vector< vector< char > * > GetColumnCommonBytes (size_t) const virtual string GetHtmlValue (size_t, size_t) const virtual void SetStringValue (size_t, size_t, const string &) virtual void SetIntValue (size_t, size_t, long) virtual void SetRealValue (size_t, size_t, double) virtual void SetObjectValue (size_t, size_t, SConstScopedObject *) virtual bool AllowEdit (size_t)
Definition at line 46 of file table_data_gcassembly.cpp.
◆ EColType Enumerator eSeq_Id eRefSeq_Acc eGenBank_Acc eChromosome eRole eStatus eParent eUnit ePatchType eMaxColNum
Definition at line 51 of file table_data_gcassembly.cpp.
◆ CreateObject() ◆ GetColsCount() size_t CTableDataGCAssembly::GetColsCount ( ) const virtual ◆ GetColumnLabel() string CTableDataGCAssembly::GetColumnLabel ( size_t col ) const virtual ◆ GetColumnType() ◆ GetIntValue() long CTableDataGCAssembly::GetIntValue ( size_t row, size_t col ) const virtual ◆ GetObjectValue()
Reimplemented from ITableData.
Definition at line 361 of file table_data_gcassembly.cpp.
References CGC_TypedSeqId_Base::e_Genbank, CGC_SeqIdAlias::e_None, CGC_TypedSeqId_Base::e_Private, CGC_SeqIdAlias::e_Public, CGC_TypedSeqId_Base::e_Refseq, eGenBank_Acc, eParent, eRefSeq_Acc, eSeq_Id, CGC_Sequence::GetParent(), CGC_Sequence_Base::GetSeq_id(), CGC_Sequence::GetSynonymSeq_id(), i, CSeq_id_Base::IsLocal(), m_Scope, m_Seqs, CSeq_id::Match(), CConstRef< C, Locker >::Reset(), row, and rapidjson::value.
◆ GetRealValue() double CTableDataGCAssembly::GetRealValue ( size_t row, size_t col ) const virtual ◆ GetRowObject() ◆ GetRowsCount() size_t CTableDataGCAssembly::GetRowsCount ( ) const virtual ◆ GetStringValue() void CTableDataGCAssembly::GetStringValue ( size_t row, size_t col, string & value ) const virtual
Implements ITableData.
Definition at line 194 of file table_data_gcassembly.cpp.
References CGC_Sequence_Base::CanGetRoles(), CGC_TypedSeqId_Base::e_Genbank, CGC_SeqIdAlias::e_None, CGC_TypedSeqId_Base::e_Private, CGC_SeqIdAlias::e_Public, CGC_TypedSeqId_Base::e_Refseq, eChromosome, CSeq_id::eContent, eGC_SequenceRole_chromosome, eGC_SequenceRole_component, eGC_SequenceRole_pseudo_scaffold, eGC_SequenceRole_scaffold, eGC_SequenceRole_submitter_pseudo_scaffold, eGenBank_Acc, eGetId_Best, eParent, ePatchType, eRefSeq_Acc, eRole, eSeq_Id, CGC_TaggedSequences_Base::eState_aligned, CGC_TaggedSequences_Base::eState_bits, CGC_TaggedSequences_Base::eState_placed, CGC_TaggedSequences_Base::eState_unlocalized, CGC_TaggedSequences_Base::eState_unplaced, eStatus, eUnit, CGC_Sequence::GetAssemblyUnit(), GetId(), CSeq_id::GetLabel(), CGC_Sequence::GetParent(), CGC_Sequence::GetParentRelation(), CGC_Sequence_Base::GetPatch_type(), CGC_Sequence::GetReplicon(), CGC_Sequence_Base::GetRoles(), CGC_Sequence_Base::GetSeq_id(), CSeq_id_Handle::GetSeqId(), CGC_Sequence::GetSynonymSeq_id(), i, CSeq_id_Base::IsLocal(), CGC_Sequence_Base::IsSetPatch_type(), ITERATE, m_Scope, m_Seqs, CSeq_id::Match(), CConstRef< C, Locker >::Reset(), row, and rapidjson::value.
◆ Init() void CTableDataGCAssembly::Init ( void ) private ◆ LoadData() ◆ m_Object ◆ m_Scope CRef<objects::CScope> CTableDataGCAssembly::m_Scope mutableprivate ◆ m_Seqs
The documentation for this class was generated from the following file:
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